Mir3971 Gene Detail

Summary

• Symbol
  Mir3971
• Name
  microRNA 3971
• Synonyms
  mmu-mir-3971

• Feature Type
  miRNA gene
• IDs
  MGI:4950411
  NCBI Gene: 100628624
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:75442255-75442337 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 45.92 cM

Strain
Comparison

• SNPs within 2kb
  93 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4950411	miRNA gene	Chr11:75442255-75442337 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0007843	miRNA gene	Chr11:76310351-76310433 (+)
A/J	MGP_AJ_G0007838	miRNA gene	Chr11:73468908-73468990 (+)
AKR/J	MGP_AKRJ_G0007813	miRNA gene	Chr11:75693095-75693177 (+)
BALB/cJ	MGP_BALBcJ_G0007816	miRNA gene	Chr11:73840617-73840699 (+)
C3H/HeJ	MGP_C3HHeJ_G0007763	miRNA gene	Chr11:75707887-75707969 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0007994	miRNA gene	Chr11:78717963-78718045 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0007138	miRNA gene	Chr11:70482678-70482760 (+)
CAST/EiJ	MGP_CASTEiJ_G0007656	miRNA gene	Chr11:76105751-76105833 (+)
CBA/J	MGP_CBAJ_G0007734	miRNA gene	Chr11:82159869-82159951 (+)
DBA/2J	MGP_DBA2J_G0007769	miRNA gene	Chr11:73072311-73072393 (+)
FVB/NJ	MGP_FVBNJ_G0007787	miRNA gene	Chr11:72633523-72633605 (+)
LP/J	MGP_LPJ_G0007847	miRNA gene	Chr11:76892843-76892925 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0007757	miRNA gene	Chr11:82711585-82711667 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007991	miRNA gene	Chr11:75901822-75901904 (+)
PWK/PhJ	MGP_PWKPhJ_G0007584	miRNA gene	Chr11:73770843-73770925 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0007479	miRNA gene	Chr11:75462156-75462238 (+)
WSB/EiJ	MGP_WSBEiJ_G0007724	miRNA gene	Chr11:75712131-75712213 (+)

Homology

• Gene Tree
  Mir3971
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Targeted
  1
• Genomic Mutations
  2 involving Mir3971
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000093100 (Evidence)
• NCBI Gene
  100628624

Representative Sequences			Length	Strain/Species
genomic	100628624	NCBI Gene Model | MGI Sequence Detail	83	C57BL/6J
transcript	NR_039553	RefSeq | MGI Sequence Detail	83	ZRU/MplStud

Other Database
Links

miRBase

MI0016981

References

• Summaries
  All 12

  Phenotypes 8
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for Mir3971:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr102976	Chr11:75440958-75440981 (+)	-1,285 bp