Mir5101 Gene Detail

Summary

• Symbol
  Mir5101
• Name
  microRNA 5101
• Synonyms
  mmu-mir-5101

• Feature Type
  miRNA gene
• IDs
  MGI:4950421
  NCBI Gene: 100628610
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr12:75955877-75955959 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 33.27 cM

Strain
Comparison

• SNPs within 2kb
  116 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4950421	miRNA gene	Chr12:75955877-75955959 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0007933	miRNA gene	Chr12:75967755-75967834 (+)
A/J	MGP_AJ_G0007926	miRNA gene	Chr12:73111826-73111908 (+)
AKR/J	MGP_AKRJ_G0007902	miRNA gene	Chr12:75320992-75321071 (+)
BALB/cJ	MGP_BALBcJ_G0007906	miRNA gene	Chr12:73572934-73573016 (+)
C3H/HeJ	MGP_C3HHeJ_G0007850	miRNA gene	Chr12:75780535-75780617 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0008088	miRNA gene	Chr12:78330687-78330769 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0007217	miRNA gene	Chr12:70450182-70450280 (+)
CAST/EiJ	MGP_CASTEiJ_G0007743	miRNA gene	Chr12:70573755-70573837 (+)
CBA/J	MGP_CBAJ_G0007821	miRNA gene	Chr12:81340064-81340146 (+)
DBA/2J	MGP_DBA2J_G0007858	miRNA gene	Chr12:72967692-72967771 (+)
FVB/NJ	MGP_FVBNJ_G0007876	miRNA gene	Chr12:71797092-71797174 (+)
LP/J	MGP_LPJ_G0007937	miRNA gene	Chr12:75964378-75964457 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0007848	miRNA gene	Chr12:84379134-84379213 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0008081	miRNA gene	Chr12:74797834-74797916 (+)
PWK/PhJ	MGP_PWKPhJ_G0007667	miRNA gene	Chr12:67325666-67325748 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0007562	miRNA gene	Chr12:69284825-69284907 (+)
WSB/EiJ	MGP_WSBEiJ_G0007811	miRNA gene	Chr12:75402719-75402801 (+)

Homology

• Gene Tree
  Mir5101
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Mir5101
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000092922 (Evidence)
• NCBI Gene
  100628610

Representative Sequences			Length	Strain/Species
genomic	100628610	NCBI Gene Model | MGI Sequence Detail	83	C57BL/6J
transcript	NR_039560	RefSeq | MGI Sequence Detail	83	ZRU/MplStud

Other Database
Links

miRBase

MI0018009

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:105741 Griffiths-Jones S, et al., miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4