Mir5110 Gene Detail

Summary

• Symbol
  Mir5110
• Name
  microRNA 5110
• Synonyms
  mmu-mir-5110

• Feature Type
  miRNA gene
• IDs
  MGI:4950430
  NCBI Gene: 100628627
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:85651442-85651528 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 51.34 cM

Strain
Comparison

• SNPs within 2kb
  76 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4950430	miRNA gene	Chr11:85651442-85651528 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0007855	miRNA gene	Chr11:87289201-87289287 (-)
A/J	MGP_AJ_G0007848	miRNA gene	Chr11:83931565-83931651 (-)
AKR/J	MGP_AKRJ_G0007823	miRNA gene	Chr11:86446453-86446539 (-)
BALB/cJ	MGP_BALBcJ_G0007827	miRNA gene	Chr11:84316159-84316245 (-)
C3H/HeJ	MGP_C3HHeJ_G0007773	miRNA gene	Chr11:86469826-86469912 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0008006	miRNA gene	Chr11:89937094-89937180 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0007147	miRNA gene	Chr11:80974027-80974113 (-)
CAST/EiJ	MGP_CASTEiJ_G0007667	miRNA gene	Chr11:87124718-87124804 (-)
CBA/J	MGP_CBAJ_G0007744	miRNA gene	Chr11:93738263-93738349 (-)
DBA/2J	MGP_DBA2J_G0007779	miRNA gene	Chr11:83506237-83506323 (-)
FVB/NJ	MGP_FVBNJ_G0007798	miRNA gene	Chr11:83000809-83000895 (-)
LP/J	MGP_LPJ_G0007857	miRNA gene	Chr11:87783900-87783986 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0007768	miRNA gene	Chr11:93855957-93856043 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0008002	miRNA gene	Chr11:86686481-86686567 (-)
PWK/PhJ	MGP_PWKPhJ_G0007594	miRNA gene	Chr11:84287656-84287742 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0007489	miRNA gene	Chr11:86229650-86229736 (-)
WSB/EiJ	MGP_WSBEiJ_G0007734	miRNA gene	Chr11:86538877-86538963 (-)

Homology

• Gene Tree
  Mir5110
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Targeted
  1
• Genomic Mutations
  2 involving Mir5110
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000093278 (Evidence)
• NCBI Gene
  100628627

Representative Sequences			Length	Strain/Species
genomic	100628627	NCBI Gene Model | MGI Sequence Detail	87	C57BL/6J
transcript	NR_039570	RefSeq | MGI Sequence Detail	87	ZRU/MplStud

Other Database
Links

miRBase

MI0018019

References

• Summaries
  All 12

  Phenotypes 8
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52