Igkv13-57-1 Pseudogene Detail

Summary

• Symbol
  Igkv13-57-1
• Name
  immunoglobulin kappa chain variable 13-57-1

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:5009856
  NCBI Gene: 692114
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:69546721-69547093 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 31.54 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  199 from dbSNP Build 142
• Strain Annotations
  3

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009856	pseudogenic gene segment	Chr6:69546721-69547143 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0000362	pseudogenic gene segment	Chr6:71629158-71629580 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0000339	pseudogenic gene segment	Chr6:69000301-69000723 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Igkv13-57-1
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  7
• RefSeq
  1

• Ensembl
  ENSMUSG00000105369 (Evidence)
• NCBI Gene
  692114

Representative Sequences			Length	Strain/Species
genomic	692114	NCBI Gene Model | MGI Sequence Detail	373	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;