Igkv12-66 Pseudogene Detail

Summary

• Symbol
  Igkv12-66
• Name
  immunoglobulin kappa chain variable 12-66

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:5009859
  NCBI Gene: 692133
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:69311588-69312060 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 31.46 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  214 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009859	pseudogenic gene segment	Chr6:69311588-69312060 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0000272	pseudogenic gene segment	Chr6:69622503-69622975 (-)
A/J	MGP_AJ_G0000245	pseudogenic gene segment	Chr6:66753280-66753752 (-)
AKR/J	MGP_AKRJ_G0000248	pseudogenic gene segment	Chr6:68760846-68763855 (-)
BALB/cJ	MGP_BALBcJ_G0000242	pseudogenic gene segment	Chr6:66989729-66990201 (-)
C3H/HeJ	MGP_C3HHeJ_G0000226	pseudogenic gene segment	Chr6:115498334-115498806 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0000356	pseudogenic gene segment	Chr6:71347556-71348028 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0000233	pseudogenic gene segment	Chr6:68760617-68761279 (-)
CBA/J	MGP_CBAJ_G0000231	pseudogenic gene segment	Chr6:74064379-74064851 (-)
DBA/2J	MGP_DBA2J_G0000228	pseudogenic gene segment	Chr6:66281490-66281962 (-)
FVB/NJ	MGP_FVBNJ_G0000236	pseudogenic gene segment	Chr6:65711459-65711931 (-)
LP/J	MGP_LPJ_G0000282	pseudogenic gene segment	Chr6:69424619-69425091 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0000334	pseudogenic gene segment	Chr6:68738321-68738793 (-)
PWK/PhJ	MGP_PWKPhJ_G0000201	pseudogenic gene segment	Chr6:65447929-65448397 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0000185	pseudogenic gene segment	Chr6:68128826-68134352 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Igkv12-66
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000105110 (Evidence)
• NCBI Gene
  692133

Representative Sequences			Length	Strain/Species
genomic	692133	NCBI Gene Model | MGI Sequence Detail	473	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;