Igkv2-93-1 Pseudogene Detail

Summary

• Symbol
  Igkv2-93-1
• Name
  immunoglobulin kappa chain variable 2-93-1

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:5009869
  NCBI Gene: 692162
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:68689909-68690492 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 31.26 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  180 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009869	pseudogenic gene segment	Chr6:68689358-68690492 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0000262	pseudogenic gene segment	Chr6:68888723-68889766 (+)
A/J	MGP_AJ_G0000236	pseudogenic gene segment	Chr6:66017221-66018456 (-)
AKR/J	MGP_AKRJ_G0000237	pseudogenic gene segment	Chr6:67939383-67940093 (-)
BALB/cJ	MGP_BALBcJ_G0000233	pseudogenic gene segment	Chr6:66300098-66300822 (+)
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0000228	pseudogenic gene segment	Chr6:68284705-68285415 (-)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0000223	pseudogenic gene segment	Chr6:64991851-65084456 (-)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0000237	pseudogenic gene segment	Chr6:77161176-77161886 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0000322	pseudogenic gene segment	Chr6:68059799-68061165 (-)
PWK/PhJ	MGP_PWKPhJ_G0000194	pseudogenic gene segment	Chr6:64594866-64595712 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0000174	pseudogenic gene segment	Chr6:67379048-67379772 (-)
WSB/EiJ	MGP_WSBEiJ_G0000231	pseudogenic gene segment	Chr6:68252780-68253501 (-)

Homology

• Gene Tree
  Igkv2-93-1
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16
• RefSeq
  1

• Ensembl
  ENSMUSG00000106318 (Evidence)
• NCBI Gene
  692162

Representative Sequences			Length	Strain/Species
genomic	692162	NCBI Gene Model | MGI Sequence Detail	584	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;