Igkv15-101-1 Pseudogene Detail

Summary

• Symbol
  Igkv15-101-1
• Name
  immunoglobulin kappa chain variable 15-101-1

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:5009872
  NCBI Gene: 692167
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:68456300-68456557 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 31.19 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  167 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009872	pseudogenic gene segment	Chr6:68456066-68456557 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0000257	pseudogenic gene segment	Chr6:68686515-68686772 (+)
A/J	MGP_AJ_G0000231	pseudogenic gene segment	Chr6:65777530-65777787 (+)
AKR/J	MGP_AKRJ_G0000234	pseudogenic gene segment	Chr6:67727006-67727263 (+)
BALB/cJ	MGP_BALBcJ_G0000228	pseudogenic gene segment	Chr6:66061729-66061986 (+)
C3H/HeJ	MGP_C3HHeJ_G0000238	pseudogenic gene segment	Chr6:116440945-116441202 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0000334	pseudogenic gene segment	Chr6:70362333-70362590 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0000225	pseudogenic gene segment	Chr6:68082837-68083094 (+)
CBA/J	MGP_CBAJ_G0000220	pseudogenic gene segment	Chr6:73130003-73130260 (+)
DBA/2J	MGP_DBA2J_G0000217	pseudogenic gene segment	Chr6:65374052-65374309 (+)
FVB/NJ	MGP_FVBNJ_G0000220	pseudogenic gene segment	Chr6:64825316-64825573 (+)
LP/J	MGP_LPJ_G0000269	pseudogenic gene segment	Chr6:68507247-68507504 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0000234	pseudogenic gene segment	Chr6:76873023-76873280 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0000317	pseudogenic gene segment	Chr6:67796630-67796887 (+)
PWK/PhJ	MGP_PWKPhJ_G0000191	pseudogenic gene segment	Chr6:64327311-64327569 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0000171	pseudogenic gene segment	Chr6:67186889-67187146 (+)
WSB/EiJ	MGP_WSBEiJ_G0000229	pseudogenic gene segment	Chr6:68117731-68117988 (+)

Homology

• Gene Tree
  Igkv15-101-1
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000106187 (Evidence)
• NCBI Gene
  692167

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106187	Ensembl Gene Model | MGI Sequence Detail	258	C57BL/6J
transcript	ENSMUST00000196661	Ensembl | MGI Sequence Detail	258	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;