Ighv1-13 Pseudogene Detail

Summary

• Symbol
  Ighv1-13
• Name
  immunoglobulin heavy variable V1-13
• Synonyms
  Gm17686

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:5009907
  NCBI Gene: 780865
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr12:114594300-114594593 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 62.41 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  222 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009907	pseudogenic gene segment	Chr12:114594300-114594731 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0000220	pseudogenic gene segment	Chr12:117350244-117350675 (-)
A/J	MGP_AJ_G0000199	pseudogenic gene segment	Chr12:112811772-112812203 (-)
AKR/J	MGP_AKRJ_G0000197	pseudogenic gene segment	Chr12:116145765-116146196 (-)
BALB/cJ	MGP_BALBcJ_G0000197	pseudogenic gene segment	Chr12:113431500-113431931 (-)
C3H/HeJ	MGP_C3HHeJ_G0000193	pseudogenic gene segment	Chr12:116498870-116499301 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0000280	pseudogenic gene segment	Chr12:120935961-120936392 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0000186	pseudogenic gene segment	Chr12:125551341-125551772 (-)
DBA/2J	MGP_DBA2J_G0000186	pseudogenic gene segment	Chr12:112390991-112391422 (-)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0000228	pseudogenic gene segment	Chr12:117257214-117257645 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0000271	pseudogenic gene segment	Chr12:115529081-115529512 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0000200	pseudogenic gene segment	Chr12:116537688-116538119 (-)

Homology

• Gene Tree
  Ighv1-13
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  APF
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000102587 (Evidence)
• NCBI Gene
  780865

Representative Sequences			Length	Strain/Species
genomic	780865	NCBI Gene Model | MGI Sequence Detail	294	C57BL/6J
polypeptide	A0A075B5I0	UniProt | EBI | MGI Sequence Detail	98	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Other
Accession IDs

MGI:4937320

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:193309 Mouse Genome Informatics Scientfic Curators, Curated associations of genes in MGI and UniProt sequence records. 2013;