Trav13n-1 Gene Detail

Summary

• Symbol
  Trav13n-1
• Name
  T cell receptor alpha variable 13N-1

• Feature Type
  gene segment
• IDs
  MGI:5009926
  NCBI Gene: 100042568
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr14:53399856-53400367 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.25 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  3 from dbSNP Build 142
• Strain Annotations
  2

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009926	gene segment	Chr14:53399856-53400367 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0002645	gene segment	Chr14:49822706-49823209 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Human Ortholog
  TRAV22, T cell receptor alpha variable 22

• Vertebrate Orthologs
  2

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  TRAV22, T cell receptor alpha variable 22
  
• Synonyms
  TCRAV13S1, TCRAV22S1
• Links
  HGNC:12119

  NCBI Gene ID: 28661

  UniProt: A0A0B4J277

  
  
• Chr Location
  14q11.2; chr14:22070557-22071208 (+)  GRCh38

---

• MGI Vertebrate Homology
  Trav13n-1 stringent orthology
  1 human;1 mouse;1 zebrafish
  
• HCOP
  vertebrate homology predictions: TRAV22
• Gene Tree
  Trav13n-1
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  8
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000104629 (Evidence)
• NCBI Gene
  100042568

Representative Sequences			Length	Strain/Species
genomic	100042568	NCBI Gene Model | MGI Sequence Detail	512	C57BL/6J
polypeptide	A0A0G2JEU8	UniProt | EBI | MGI Sequence Detail	110	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR007110 Immunoglobulin-like domain
  IPR036179 Immunoglobulin-like domain superfamily
  IPR013783 Immunoglobulin-like fold
  IPR013106 Immunoglobulin V-set domain
  IPR051896 T cell receptor alpha variable region

References

• Summaries
  All 4
• Earliest
  J:53168 Bairoch A, et al., SWISS-PROT Annotated protein sequence database. Database Release. 1999;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;