Trav5d-2 Pseudogene Detail

Summary

• Symbol
  Trav5d-2
• Name
  T cell receptor alpha variable 5D-2

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:5009954
  NCBI Gene: 100101488
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr14:53151885-53152159 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.14 cM
• Mapping Data
  1 experiment

Strain
Comparison

• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009954	pseudogenic gene segment	Chr14:53151874-53152159 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002611	pseudogenic gene segment	Chr14:47173523-47173791 (+)
A/J	MGP_AJ_G0002585	pseudogenic gene segment	Chr14:45761376-45761644 (+)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0002573	pseudogenic gene segment	Chr14:45847009-45847277 (+)
C3H/HeJ	MGP_C3HHeJ_G0002536	pseudogenic gene segment	Chr14:47184909-47185177 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0002530	pseudogenic gene segment	Chr14:50560598-50560866 (+)
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0002560	pseudogenic gene segment	Chr14:45082212-45082480 (+)
LP/J	MGP_LPJ_G0002610	pseudogenic gene segment	Chr14:47635993-47636261 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002545	pseudogenic gene segment	Chr14:50015656-50015924 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002721	pseudogenic gene segment	Chr14:46738740-46739008 (+)
PWK/PhJ	MGP_PWKPhJ_G0002471	pseudogenic gene segment	Chr14:42254654-42254922 (+)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Trav5d-2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Trav5d-2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  15
• RefSeq
  1

• Ensembl
  ENSMUSG00000104714 (Evidence)
• NCBI Gene
  100101488

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104714	Ensembl Gene Model | MGI Sequence Detail	275	C57BL/6J
transcript	ENSMUST00000196107	Ensembl | MGI Sequence Detail	275	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;