Trbv28 Pseudogene Detail

Summary

• Symbol
  Trbv28
• Name
  T cell receptor beta variable 28

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:5009971
  NCBI Gene: 100124694
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:41243821-41244084 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 19.37 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  141 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009971	pseudogenic gene segment	Chr6:41243631-41244084 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002635	pseudogenic gene segment	Chr6:39745109-39745372 (+)
A/J	MGP_AJ_G0002607	pseudogenic gene segment	Chr6:38019795-38020058 (+)
AKR/J	MGP_AKRJ_G0002592	pseudogenic gene segment	Chr6:39224435-39224698 (+)
BALB/cJ	MGP_BALBcJ_G0002595	pseudogenic gene segment	Chr6:38236275-38236538 (+)
C3H/HeJ	MGP_C3HHeJ_G0002558	pseudogenic gene segment	Chr6:39256452-39256715 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002738	pseudogenic gene segment	Chr6:40718460-40718723 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002288	pseudogenic gene segment	Chr6:35803350-35803612 (+)
CAST/EiJ	MGP_CASTEiJ_G0002534	pseudogenic gene segment	Chr6:39154119-39154382 (+)
CBA/J	MGP_CBAJ_G0002554	pseudogenic gene segment	Chr6:42394653-42394916 (+)
DBA/2J	MGP_DBA2J_G0002557	pseudogenic gene segment	Chr6:37846268-37846531 (+)
FVB/NJ	MGP_FVBNJ_G0002578	pseudogenic gene segment	Chr6:37582906-37583169 (+)
LP/J	MGP_LPJ_G0002637	pseudogenic gene segment	Chr6:39752371-39752634 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002567	pseudogenic gene segment	Chr6:44639708-44639971 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002748	pseudogenic gene segment	Chr6:39201669-39201932 (+)
PWK/PhJ	MGP_PWKPhJ_G0002491	pseudogenic gene segment	Chr6:37461609-37461872 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002443	pseudogenic gene segment	Chr6:38908581-38908844 (+)
WSB/EiJ	MGP_WSBEiJ_G0002562	pseudogenic gene segment	Chr6:39133994-39134257 (+)

Homology

• Gene Tree
  Trbv28
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000104326 (Evidence)
• NCBI Gene
  100124694

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104326	Ensembl Gene Model | MGI Sequence Detail	264	C57BL/6J
transcript	ENSMUST00000192804	Ensembl | MGI Sequence Detail	264	Not Applicable

Other
Accession IDs

MGI:7538963, MGI:7611843

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;