Trav5n-2 Pseudogene Detail

Summary

• Symbol
  Trav5n-2
• Name
  T cell receptor alpha variable 5N-2

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:5009974
  NCBI Gene: 100126454
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr14:53462859-53463133 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.28 cM
• Mapping Data
  1 experiment

Strain
Comparison

• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009974	pseudogenic gene segment	Chr14:53462850-53463133 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002617	pseudogenic gene segment	Chr14:47499734-47500002 (+)
A/J	MGP_AJ_G0002589	pseudogenic gene segment	Chr14:46141663-46141931 (+)
AKR/J	MGP_AKRJ_G0002573	pseudogenic gene segment	Chr14:48266121-48266389 (+)
BALB/cJ	MGP_BALBcJ_G0002576	pseudogenic gene segment	Chr14:46166852-46167120 (+)
C3H/HeJ	MGP_C3HHeJ_G0002538	pseudogenic gene segment	Chr14:47507790-47508058 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0002514	pseudogenic gene segment	Chr14:44252437-44252705 (+)
CBA/J	MGP_CBAJ_G0002532	pseudogenic gene segment	Chr14:50884035-50884303 (+)
DBA/2J	MGP_DBA2J_G0002539	pseudogenic gene segment	Chr14:46303467-46303735 (+)
FVB/NJ	MGP_FVBNJ_G0002563	pseudogenic gene segment	Chr14:45410465-45410733 (+)
LP/J	MGP_LPJ_G0002613	pseudogenic gene segment	Chr14:47983732-47984000 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002547	pseudogenic gene segment	Chr14:50350011-50350279 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002723	pseudogenic gene segment	Chr14:47045372-47045640 (+)
PWK/PhJ	MGP_PWKPhJ_G0002472	pseudogenic gene segment	Chr14:42530920-42531188 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002423	pseudogenic gene segment	Chr14:43165127-43513269 (+)
WSB/EiJ	MGP_WSBEiJ_G0002533	pseudogenic gene segment	Chr10:32537935-32538203 (+)

Homology

• Gene Tree
  Trav5n-2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Trav5n-2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000105956 (Evidence)
• NCBI Gene
  100126454

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105956	Ensembl Gene Model | MGI Sequence Detail	275	C57BL/6J
transcript	ENSMUST00000197136	Ensembl | MGI Sequence Detail	275	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;