Gm17987 Pseudogene Detail

Summary

• Symbol
  Gm17987
• Name
  predicted gene, 17987

• Feature Type
  pseudogene
• IDs
  MGI:5010172
  NCBI Gene: 100416232
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:56528759-56529339 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 33.50 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  157 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010172	pseudogene	Chr7:56528759-56529361 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013914	pseudogene	Chr7:57685473-57686075 (+)
A/J	MGP_AJ_G0013933	pseudogene	Chr7:56818555-56819157 (+)
AKR/J	MGP_AKRJ_G0013867	pseudogene	Chr7:58135624-58136226 (+)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0013726	pseudogene	Chr7:58473087-58473689 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014325	pseudogene	Chr7:60306095-60306697 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012178	pseudogene	Chr7:59434192-59434697 (+)
CAST/EiJ	MGP_CASTEiJ_G0013388	pseudogene	Chr7:49678273-49678875 (+)
CBA/J	MGP_CBAJ_G0013708	pseudogene	Chr7:62405864-62406466 (+)
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0013787	pseudogene	Chr7:55767945-55768547 (+)
LP/J	MGP_LPJ_G0013858	pseudogene	Chr7:58786540-58787142 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013813	pseudogene	Chr7:61964993-61965595 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014281	pseudogene	Chr7:57131065-57131667 (+)
PWK/PhJ	MGP_PWKPhJ_G0013201	pseudogene	Chr7:49079320-49079922 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012967	pseudogene	Chr7:45187914-45188506 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm17987
  

Human Diseases

• References
  4 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  31 phenotype references
  

• All Mutations and Alleles
  3
• Radiation induced
  1
• Targeted
  1
• Transgenic
  1
• Genomic Mutations
  3 involving Gm17987
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000108556 (Evidence)
• NCBI Gene
  100416232

Representative Sequences			Length	Strain/Species
genomic	100416232	NCBI Gene Model | MGI Sequence Detail	581	C57BL/6J

References

• Summaries
  All 34

  Diseases 4

  Phenotypes 31
• Earliest
  J:56614 Gabriel JM, et al., A transgene insertion creating a heritable chromosome deletion mouse model of Prader-Willi and angelman syndromes. Proc Natl Acad Sci U S A. 1999 Aug 3;96(16):9258-63
• Latest
  J:335224 Nakai N, et al., Virtual reality-based real-time imaging reveals abnormal cortical dynamics during behavioral transitions in a mouse model of autism. Cell Rep. 2023 Mar 24;:112258