Gm18038 Pseudogene Detail

Summary

• Symbol
  Gm18038
• Name
  predicted gene, 18038

• Feature Type
  pseudogene
• IDs
  MGI:5010223
  NCBI Gene: 100416322
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:24290242-24290726 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 10.67 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  154 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010223	pseudogene	Chr5:24290242-24290752 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013011	pseudogene	Chr5:21798866-21799350 (+)
A/J	MGP_AJ_G0012999	pseudogene	Chr5:21055357-21055841 (+)
AKR/J	MGP_AKRJ_G0012965	pseudogene	Chr5:21917982-21918466 (+)
BALB/cJ	MGP_BALBcJ_G0012978	pseudogene	Chr5:21573852-21574336 (+)
C3H/HeJ	MGP_C3HHeJ_G0012830	pseudogene	Chr5:22024186-22024670 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013333	pseudogene	Chr5:23273526-23274010 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0012558	pseudogene	Chr5:21196268-21196752 (+)
CBA/J	MGP_CBAJ_G0012797	pseudogene	Chr5:23640903-23641387 (+)
DBA/2J	MGP_DBA2J_G0012873	pseudogene	Chr5:21352897-21353381 (+)
FVB/NJ	MGP_FVBNJ_G0012878	pseudogene	Chr5:20726994-20727478 (+)
LP/J	MGP_LPJ_G0012943	pseudogene	Chr5:22198877-22199361 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012892	pseudogene	Chr5:24798963-24799447 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013338	pseudogene	Chr5:21554870-21555354 (+)
PWK/PhJ	MGP_PWKPhJ_G0012380	pseudogene	Chr5:20432239-20432725 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0012598	pseudogene	Chr5:21614700-21615184 (+)

Homology

• Gene Tree
  Gm18038
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  4 involving Gm18038
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000106118 (Evidence)
• NCBI Gene
  100416322

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106118	Ensembl Gene Model | MGI Sequence Detail	485	C57BL/6J
transcript	ENSMUST00000197900	Ensembl | MGI Sequence Detail	485	Not Applicable

References

• Summaries
  All 12

  Diseases 1

  Phenotypes 9
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:119563 Alt B, et al., Arteries define the position of the thyroid gland during its developmental relocalisation. Development. 2006 Oct;133(19):3797-804