Pnma6e Gene Detail

Summary

• Symbol
  Pnma6e
• Name
  PNMA family member 6E
• Synonyms
  Gm18336

• Feature Type
  protein coding gene
• IDs
  MGI:5010521
  NCBI Gene: 100416956
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrX:72440045-72442342 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 37.30 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  102 from dbSNP Build 142
• Strain Annotations
  8

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010521	protein coding gene	ChrX:72438793-72442418 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0014511	pseudogene	ChrX:69138189-69140997 (-)
A/J	MGP_AJ_G0014520	pseudogene	ChrX:69356144-69358275 (-)
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0014944	pseudogene	ChrX:71276638-71282519 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0013942	pseudogene	ChrX:54970560-54974134 (-)
CBA/J	MGP_CBAJ_G0014292	pseudogene	ChrX:73221800-73224078 (-)
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0014366	pseudogene	ChrX:68151151-68154104 (-)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0014404	pseudogene	ChrX:75814939-75817212 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Human Ortholog
  PNMA6E, PNMA family member 6E

• Vertebrate Orthologs
  2

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  PNMA6E, PNMA family member 6E
  
• Links
  HGNC:50767

  NCBI Gene ID: 649238

  UniProt: A0A0J9YXQ4

  
  
• Chr Location
  chrX:153395639-153414004 (-)  GRCh38

---

• Human Ortholog
  PNMA6F, PNMA family member 6F
  
• Synonyms
  PNMA6BL
• Links
  HGNC:53119

  NCBI Gene ID: 105373377

  UniProt: A0A0J9YX94

  
  
• Chr Location
  X

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• MGI Vertebrate Homology
  Pnma6e stringent orthology
  2 human;1 mouse
  
• HCOP
  vertebrate homology predictions: PNMA6E, PNMA6F
• Gene Tree
  Pnma6e
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  15
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000096966 (Evidence)
• NCBI Gene
  100416956

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000096966	Ensembl Gene Model | MGI Sequence Detail	2298	C57BL/6J
transcript	ENSMUST00000180787	Ensembl | MGI Sequence Detail	2298	Not Applicable
polypeptide	ENSMUSP00000146964	Ensembl | MGI Sequence Detail	765	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR026523 Paraneoplastic antigen Ma
  IPR048270 Paraneoplastic antigen Ma-like, C-terminal domain
  IPR048271 Paraneoplastic antigen Ma-like, N-terminal domain

Other
Accession IDs

MGI:7448504

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;