Gm18397 Pseudogene Detail

Summary

• Symbol
  Gm18397
• Name
  predicted gene, 18397

• Feature Type
  pseudogene
• IDs
  MGI:5010582
  NCBI Gene: 100417098
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr17:23305073-23305637 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 11.51 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  11 from dbSNP Build 142
• Strain Annotations
  9

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010582	pseudogene	Chr17:23305046-23305637 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0040141	pseudogene	Chr17:22025984-22026570 (-)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0040118	pseudogene	Chr17:21489738-21490912 (-)
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0038859	pseudogene	Chr17:21613224-21613894 (-)
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0039931	pseudogene	Chr17:20913402-20914094 (-)
FVB/NJ	MGP_FVBNJ_G0039889	pseudogene	Chr17:20665754-20666339 (-)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0039880	pseudogene	Chr17:23407172-23407750 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040809	pseudogene	Chr17:21713091-21713677 (-)
PWK/PhJ	MGP_PWKPhJ_G0038551	pseudogene	Chr17:19745750-19747804 (-)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm18397
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  16 phenotype references
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm18397
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  13
• RefSeq
  1

• Ensembl
  ENSMUSG00000093703 (Evidence)
• NCBI Gene
  100417098

Representative Sequences			Length	Strain/Species
genomic	100417098	NCBI Gene Model | MGI Sequence Detail	565	C57BL/6J

References

• Summaries
  All 19

  Phenotypes 16
• Earliest
  J:84774 Dunn LC, Studies of the genetic variability in populations of wild house mice. II. Analysis of eight additional alleles at locus T. Genetics. 1957;42:299-311
• Latest
  J:273736 Charron Y, et al., Two isoforms of the RAC-specific guanine nucleotide exchange factor TIAM2 act oppositely on transmission ratio distortion by the mouse t-haplotype. PLoS Genet. 2019 Feb;15(2):e1007964