Gm18538 Pseudogene Detail

Summary

• Symbol
  Gm18538
• Name
  predicted gene, 18538

• Feature Type
  pseudogene
• IDs
  MGI:5010723
  NCBI Gene: 100417335
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:48933292-48933775 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 23.81 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  160 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010723	pseudogene	Chr6:48933004-48933790 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013444	pseudogene	Chr6:47939405-47939888 (+)
A/J	MGP_AJ_G0013428	pseudogene	Chr6:45748500-45750040 (+)
AKR/J	MGP_AKRJ_G0013392	pseudogene	Chr6:47365028-47365511 (+)
BALB/cJ	MGP_BALBcJ_G0013406	pseudogene	Chr6:46090691-46091174 (+)
C3H/HeJ	MGP_C3HHeJ_G0013256	pseudogene	Chr6:47365650-47366133 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013790	pseudogene	Chr6:49065488-49065971 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0012963	pseudogene	Chr6:47095567-47096242 (+)
CBA/J	MGP_CBAJ_G0013225	pseudogene	Chr6:51101307-51101790 (+)
DBA/2J	MGP_DBA2J_G0013309	pseudogene	Chr6:45663698-45664181 (+)
FVB/NJ	MGP_FVBNJ_G0013305	pseudogene	Chr6:45299896-45300379 (+)
LP/J	MGP_LPJ_G0013378	pseudogene	Chr6:47918398-47918881 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013323	pseudogene	Chr6:53879963-53880635 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013785	pseudogene	Chr6:47222070-47222553 (+)
PWK/PhJ	MGP_PWKPhJ_G0012775	pseudogene	Chr6:45199733-45200617 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012556	pseudogene	Chr6:46567854-46568330 (+)
WSB/EiJ	MGP_WSBEiJ_G0013006	pseudogene	Chr6:47227364-47227847 (+)

Homology

• Gene Tree
  Gm18538
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000107943 (Evidence)
• NCBI Gene
  100417335

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107943	Ensembl Gene Model | MGI Sequence Detail	484	C57BL/6J
transcript	ENSMUST00000204265	Ensembl | MGI Sequence Detail	484	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;