Gm18609 Pseudogene Detail

Summary

• Symbol
  Gm18609
• Name
  predicted gene, 18609

• Feature Type
  pseudogene
• IDs
  MGI:5010794
  NCBI Gene: 100417431
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:128162328-128165747 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 62.91 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  155 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010794	pseudogene	Chr6:128162240-128165840 (+)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0013699	pseudogene	Chr6:126720535-126725013 (+)
AKR/J	MGP_AKRJ_G0013661	pseudogene	Chr6:130131731-130155556 (+)
BALB/cJ	MGP_BALBcJ_G0013677	pseudogene	Chr6:126284709-126288629 (+)
C3H/HeJ	MGP_C3HHeJ_G0013521	pseudogene	Chr6:130277758-130281358 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014064	pseudogene	Chr6:135190864-135194464 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012048	pseudogene	Chr6:123880792-123884450 (+)
CAST/EiJ	MGP_CASTEiJ_G0013209	pseudogene	Chr6:130535297-130540958 (+)
CBA/J	MGP_CBAJ_G0013492	pseudogene	Chr6:140376201-140379801 (+)
DBA/2J	MGP_DBA2J_G0013573	pseudogene	Chr6:125601253-125624629 (+)
FVB/NJ	MGP_FVBNJ_G0013571	pseudogene	Chr6:124543208-124546773 (+)
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0014058	pseudogene	Chr6:130128890-130132490 (+)
PWK/PhJ	MGP_PWKPhJ_G0013013	pseudogene	Chr6:123893539-123897101 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012795	pseudogene	Chr6:128221395-128256310 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm18609
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000107810 (Evidence)
• NCBI Gene
  100417431

Representative Sequences			Length	Strain/Species
genomic	100417431	NCBI Gene Model | MGI Sequence Detail	3420	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;