Gm18642 Pseudogene Detail

Summary

• Symbol
  Gm18642
• Name
  predicted gene, 18642

• Feature Type
  pseudogene
• IDs
  MGI:5010827
  NCBI Gene: 100417488
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:56675829-56677228 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 33.52 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  218 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010827	pseudogene	Chr7:56675767-56677282 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013915	pseudogene	Chr7:57842795-57844194 (+)
A/J	MGP_AJ_G0013934	pseudogene	Chr7:56961704-56963103 (+)
AKR/J	MGP_AKRJ_G0013868	pseudogene	Chr7:58285669-58287068 (+)
BALB/cJ	MGP_BALBcJ_G0013890	pseudogene	Chr7:56544664-56546063 (+)
C3H/HeJ	MGP_C3HHeJ_G0013727	pseudogene	Chr7:58624356-58625755 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014326	pseudogene	Chr7:60459647-60461046 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012179	pseudogene	Chr7:59554186-59555567 (+)
CAST/EiJ	MGP_CASTEiJ_G0013389	pseudogene	Chr7:49812153-49813545 (+)
CBA/J	MGP_CBAJ_G0013709	pseudogene	Chr7:62554403-62555802 (+)
DBA/2J	MGP_DBA2J_G0013786	pseudogene	Chr7:55955793-55957192 (+)
FVB/NJ	MGP_FVBNJ_G0013788	pseudogene	Chr7:55912175-55913574 (+)
LP/J	MGP_LPJ_G0013859	pseudogene	Chr7:58935493-58936892 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013814	pseudogene	Chr7:62134046-62135445 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014282	pseudogene	Chr7:57286683-57288082 (+)
PWK/PhJ	MGP_PWKPhJ_G0013202	pseudogene	Chr7:49202526-49203925 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012968	pseudogene	Chr7:45318353-45319752 (+)
WSB/EiJ	MGP_WSBEiJ_G0013450	pseudogene	Chr7:57895170-57896569 (+)

Homology

• Gene Tree
  Gm18642
  

Human Diseases

• References
  4 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  31 phenotype references
  

• All Mutations and Alleles
  3
• Radiation induced
  1
• Targeted
  1
• Transgenic
  1
• Genomic Mutations
  3 involving Gm18642
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000108377 (Evidence)
• NCBI Gene
  100417488

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108377	Ensembl Gene Model | MGI Sequence Detail	1400	C57BL/6J
transcript	ENSMUST00000206642	Ensembl | MGI Sequence Detail	1400	Not Applicable

References

• Summaries
  All 34

  Diseases 4

  Phenotypes 31
• Earliest
  J:56614 Gabriel JM, et al., A transgene insertion creating a heritable chromosome deletion mouse model of Prader-Willi and angelman syndromes. Proc Natl Acad Sci U S A. 1999 Aug 3;96(16):9258-63
• Latest
  J:335224 Nakai N, et al., Virtual reality-based real-time imaging reveals abnormal cortical dynamics during behavioral transitions in a mouse model of autism. Cell Rep. 2023 Mar 24;:112258