Pou5f1-rs9 Pseudogene Detail

Summary

• Symbol
  Pou5f1-rs9
• Name
  POU domain, class 5, transcription factor 1, related sequence 9
• Synonyms
  Gm18915, Oct4-rs9, Otf3-rs9

• Feature Type
  pseudogene
• IDs
  MGI:101885
  NCBI Gene: 100417948
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:46072324-46073244 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 25.36 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  98 from dbSNP Build 142
• Strain Annotations
  1
• RFLP
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_101885	pseudogene	Chr9:46072324-46073244 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Sequences &
Gene Models

• All Sequences
  3
• RefSeq
  1

• NCBI Gene
  100417948

Representative Sequences			Length	Strain/Species
genomic	100417948	NCBI Gene Model | MGI Sequence Detail	921	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGD-MRK-12978, MGD-MRK-13079, MGD-MRK-18711, MGI:5011100

References

• Summaries
  All 6
• Earliest
  J:1911 Yeom YI, et al., Structure, expression and chromosomal location of the Oct-4 gene. Mech Dev. 1991 Nov;35(3):171-9