Gm18953 Pseudogene Detail

Summary

• Symbol
  Gm18953
• Name
  predicted gene, 18953

• Feature Type
  pseudogene
• IDs
  MGI:5011138
  NCBI Gene: 100418025
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:90069827-90071767 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 50.14 cM
• Mapping Data
  1 experiment

Strain
Comparison

• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011138	pseudogene	Chr2:90069825-90071767 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0040267	pseudogene	Chr2:91446934-91449036 (+)
A/J	MGP_AJ_G0040251	pseudogene	Chr2:88044215-88046212 (-)
AKR/J	MGP_AKRJ_G0040184	pseudogene	Chr2:90485525-90486866 (-)
BALB/cJ	MGP_BALBcJ_G0040248	pseudogene	Chr2:88203011-88205979 (-)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0040842	pseudogene	Chr2:94943722-94945715 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037275	pseudogene	Chr2:84569745-84571694 (-)
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0040007	pseudogene	Chr2:86732824-86741664 (-)
LP/J	MGP_LPJ_G0040098	pseudogene	Chr2:91890045-91893913 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0040939	pseudogene	Chr2:90300746-90302743 (+)
PWK/PhJ	MGP_PWKPhJ_G0038666	pseudogene	Chr2:87355757-87357757 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0038359	pseudogene	Chr2:90112223-90114152 (-)
WSB/EiJ	MGP_WSBEiJ_G0039193	pseudogene	Chr2:91111583-91113568 (-)

Homology

• Gene Tree
  Gm18953
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Radiation induced
  1
• Targeted
  2
• Genomic Mutations
  4 involving Gm18953
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  1

• Ensembl
  ENSMUSG00000093625 (Evidence)
• NCBI Gene
  100418025

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093625	Ensembl Gene Model | MGI Sequence Detail	1941	C57BL/6J
transcript	ENSMUST00000175694	Ensembl | MGI Sequence Detail	300	Not Applicable

References

• Summaries
  All 9

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087

TSS for Gm18953:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr18750	Chr2:90069822-90069845 (+)	7 bp