Gm18971 Pseudogene Detail

Summary

• Symbol
  Gm18971
• Name
  predicted gene, 18971

• Feature Type
  pseudogene
• IDs
  MGI:5011156
  NCBI Gene: 100418057
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:109119543-109119916 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 53.24 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  62 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011156	pseudogene	Chr5:109119543-109120045 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013227	pseudogene	Chr5:111170949-111171322 (+)
A/J	MGP_AJ_G0013207	pseudogene	Chr5:106893236-106893609 (+)
AKR/J	MGP_AKRJ_G0013174	pseudogene	Chr5:110317826-110318199 (+)
BALB/cJ	MGP_BALBcJ_G0013187	pseudogene	Chr5:108052499-108052872 (+)
C3H/HeJ	MGP_C3HHeJ_G0013035	pseudogene	Chr5:110794217-110794590 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013553	pseudogene	Chr5:115656292-115656665 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0013005	pseudogene	Chr5:119640883-119641256 (+)
DBA/2J	MGP_DBA2J_G0013088	pseudogene	Chr5:106972329-106972702 (+)
FVB/NJ	MGP_FVBNJ_G0013087	pseudogene	Chr5:105696936-105697309 (+)
LP/J	MGP_LPJ_G0013160	pseudogene	Chr5:111727539-111727912 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013106	pseudogene	Chr5:124477039-124477412 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013555	pseudogene	Chr5:109836074-109836447 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0012800	pseudogene	Chr5:110171563-110171936 (+)

Homology

• Gene Tree
  Gm18971
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm18971
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000105193 (Evidence)
• NCBI Gene
  100418057

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105193	Ensembl Gene Model | MGI Sequence Detail	374	C57BL/6J
transcript	ENSMUST00000197240	Ensembl | MGI Sequence Detail	374	Not Applicable

References

• Summaries
  All 8

  Phenotypes 5
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17