Gm19428 Gene Detail

Summary

• Symbol
  Gm19428
• Name
  predicted gene, 19428

• Feature Type
  protein coding gene
• IDs
  MGI:5011613
  NCBI Gene: 100502880
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:65693588-65705515 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 34.48 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  80 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011613	protein coding gene	Chr13:65693588-65705515 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Human Ortholog
  ZNF700, zinc finger protein 700

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  ZNF700, zinc finger protein 700
  
• Links
  HGNC:25292

  NCBI Gene ID: 90592

  neXtProt AC: NX_Q9H0M5

  UniProt: Q9H0M5

  
  
• Chr Location
  19p13.2; chr19:11925068-11950773 (+)  GRCh38

---

• MGI Vertebrate Homology
  Gm19428 stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: ZNF700

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  1
• Gene trapped
  4
• Genomic Mutations
  1 involving Gm19428
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  4
• RefSeq
  2

• NCBI Gene
  100502880

Representative Sequences			Length	Strain/Species
genomic	100502880	NCBI Gene Model | MGI Sequence Detail	11928	C57BL/6J
transcript	NM_001384228	RefSeq | MGI Sequence Detail	2951	ZRU/MplStud
polypeptide	NP_001371157	RefSeq | MGI Sequence Detail	576	ZRU/MplStud

References

• Summaries
  All 8

  Phenotypes 6
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm19428:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr123077	Chr13:65705504-65705523 (-)	1 bp