Gm19554 Gene Detail

Summary

• Symbol
  Gm19554
• Name
  predicted gene, 19554

• Feature Type
  lncRNA gene
• IDs
  MGI:5011739
  NCBI Gene: 100503099
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:105866070-105868692 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 56.21 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  164 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011739	lncRNA gene	Chr12:105865675-105868692 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm19554
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm19554
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  8
• RefSeq
  2

• Ensembl
  ENSMUSG00000113835 (Evidence)
• NCBI Gene
  100503099

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113835	Ensembl Gene Model | MGI Sequence Detail	2623	C57BL/6J
transcript	ENSMUST00000220934	Ensembl | MGI Sequence Detail	2389	Not Applicable

Molecular
Reagents

• All nucleic 4

  cDNA 4

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for Gm19554:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr114927	Chr12:105866115-105866125 (+)	50 bp