Gm19582 Gene Detail

Summary

• Symbol
  Gm19582
• Name
  predicted gene, 19582

• Feature Type
  lncRNA gene
• IDs
  MGI:5011767
  NCBI Gene: 100503175
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:87781069-87782021 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 44.44 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  92 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011767	lncRNA gene	Chr1:87781069-87782021 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0002714	antisense lncRNA gene	Chr1:89240531-89241482 (-)
A/J	MGP_AJ_G0002690	antisense lncRNA gene	Chr1:85889858-85890809 (-)
AKR/J	MGP_AKRJ_G0002671	antisense lncRNA gene	Chr1:88430918-88431870 (-)
BALB/cJ	MGP_BALBcJ_G0002677	antisense lncRNA gene	Chr1:86007184-86008136 (-)
C3H/HeJ	MGP_C3HHeJ_G0002636	antisense lncRNA gene	Chr1:88701420-88702372 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0002820	antisense lncRNA gene	Chr1:92544228-92545180 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002368	antisense lncRNA gene	Chr1:80335424-80336379 (-)
CAST/EiJ	MGP_CASTEiJ_G0002608	antisense lncRNA gene	Chr1:87898518-87899469 (-)
CBA/J	MGP_CBAJ_G0002631	antisense lncRNA gene	Chr1:95515687-95516639 (-)
DBA/2J	MGP_DBA2J_G0002637	antisense lncRNA gene	Chr1:85180815-85181766 (-)
FVB/NJ	MGP_FVBNJ_G0002657	antisense lncRNA gene	Chr1:84243294-84244245 (-)
LP/J	MGP_LPJ_G0002716	antisense lncRNA gene	Chr1:90276689-90277640 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002647	antisense lncRNA gene	Chr1:98769850-98770801 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002825	antisense lncRNA gene	Chr1:88542557-88543508 (-)
PWK/PhJ	MGP_PWKPhJ_G0002566	antisense lncRNA gene	Chr1:84491861-84492812 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0002519	antisense lncRNA gene	Chr1:87434498-87435449 (-)
WSB/EiJ	MGP_WSBEiJ_G0002638	antisense lncRNA gene	Chr1:88204550-88205501 (-)

Homology

• Gene Tree
  Gm19582
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm19582
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000101942 (Evidence)
• NCBI Gene
  100503175

Representative Sequences			Length	Strain/Species
genomic	100503175	NCBI Gene Model | MGI Sequence Detail	953	C57BL/6J
transcript	NR_136921	RefSeq | MGI Sequence Detail	841	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm19582:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr12865	Chr1:87781968-87781981 (-)	46 bp