Gm20109 Gene Detail

Summary

• Symbol
  Gm20109
• Name
  predicted gene, 20109

• Feature Type
  lncRNA gene
• IDs
  MGI:5012294
  NCBI Gene: 100504201
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr17:28741355-28742122 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 14.73 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  111 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5012294	lncRNA gene	Chr17:28741355-28742122 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0005709	lincRNA gene	Chr17:27935597-27936364 (-)
A/J	MGP_AJ_G0005698	lincRNA gene	Chr17:27005992-27006759 (-)
AKR/J	MGP_AKRJ_G0005677	lincRNA gene	Chr17:27214282-27215049 (-)
BALB/cJ	MGP_BALBcJ_G0005678	lincRNA gene	Chr17:27277420-27278187 (-)
C3H/HeJ	MGP_C3HHeJ_G0005625	lincRNA gene	Chr17:27601340-27602107 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0005836	lincRNA gene	Chr17:29065603-29066370 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005189	lincRNA gene	Chr17:24374570-24375331 (-)
CAST/EiJ	MGP_CASTEiJ_G0005567	lincRNA gene	Chr17:27581815-27582582 (-)
CBA/J	MGP_CBAJ_G0005613	lincRNA gene	Chr17:30107691-30108458 (-)
DBA/2J	MGP_DBA2J_G0005631	lincRNA gene	Chr17:26564393-26565160 (-)
FVB/NJ	MGP_FVBNJ_G0005657	lincRNA gene	Chr17:26378391-26379158 (-)
LP/J	MGP_LPJ_G0005712	lincRNA gene	Chr17:28195726-28196493 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005642	lincRNA gene	Chr17:29526076-29526843 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005836	lincRNA gene	Chr17:27654199-27654966 (-)
PWK/PhJ	MGP_PWKPhJ_G0005513	lincRNA gene	Chr17:25382831-25383598 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0005432	lincRNA gene	Chr17:25633370-25634142 (-)
WSB/EiJ	MGP_WSBEiJ_G0005619	lincRNA gene	Chr17:27642934-27643701 (-)

Homology

• Gene Tree
  Gm20109
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000097714 (Evidence)
• NCBI Gene
  100504201

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097714	Ensembl Gene Model | MGI Sequence Detail	768	C57BL/6J
transcript	ENSMUST00000180802	Ensembl | MGI Sequence Detail	671	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;