Gm20324 Gene Detail

Summary

• Symbol
  Gm20324
• Name
  predicted gene, 20324

• Feature Type
  lncRNA gene
• IDs
  MGI:5012509
  NCBI Gene: 100504637
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr15:82783281-82790017 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 38.76 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  143 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5012509	lncRNA gene	Chr15:82783281-82790019 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003298	antisense lncRNA gene	Chr15:83540097-83547570 (+)
A/J	MGP_AJ_G0003274	antisense lncRNA gene	Chr15:80498629-80505363 (+)
AKR/J	MGP_AKRJ_G0003257	antisense lncRNA gene	Chr15:82812696-82819430 (+)
BALB/cJ	MGP_BALBcJ_G0003263	antisense lncRNA gene	Chr15:80636796-80644401 (+)
C3H/HeJ	MGP_C3HHeJ_G0003216	antisense lncRNA gene	Chr15:82806719-82815909 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003405	antisense lncRNA gene	Chr15:86763871-86772021 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002927	antisense lncRNA gene	Chr15:76898566-76905266 (+)
CAST/EiJ	MGP_CASTEiJ_G0003182	antisense lncRNA gene	Chr15:83535189-83541908 (+)
CBA/J	MGP_CBAJ_G0003213	antisense lncRNA gene	Chr15:89511514-89519927 (+)
DBA/2J	MGP_DBA2J_G0003218	antisense lncRNA gene	Chr15:80001327-80008307 (+)
FVB/NJ	MGP_FVBNJ_G0003237	antisense lncRNA gene	Chr15:79030549-79037045 (+)
LP/J	MGP_LPJ_G0003291	antisense lncRNA gene	Chr15:83701027-83710533 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003226	antisense lncRNA gene	Chr15:94449541-94456897 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003407	antisense lncRNA gene	Chr15:82838244-82846095 (+)
PWK/PhJ	MGP_PWKPhJ_G0003139	antisense lncRNA gene	Chr15:79970593-79977617 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003085	antisense lncRNA gene	Chr15:82557003-82564869 (+)
WSB/EiJ	MGP_WSBEiJ_G0003216	antisense lncRNA gene	Chr15:83343784-83350274 (+)

Homology

• Gene Tree
  Gm20324
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  24 phenotype references
  

• All Mutations and Alleles
  17
• Chemically induced (other)
  1
• Gene trapped
  14
• Radiation induced
  2
• Genomic Mutations
  3 involving Gm20324
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000100199 (Evidence)
• NCBI Gene
  100504637

Representative Sequences			Length	Strain/Species
genomic	100504637	NCBI Gene Model | MGI Sequence Detail	6737	C57BL/6J
transcript	NR_045068	RefSeq | MGI Sequence Detail	1116	ZRU/MplStud

Molecular
Reagents

• All nucleic 5

  cDNA 5

References

• Summaries
  All 29

  Diseases 1

  Phenotypes 24
• Earliest
  J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
• Latest
  J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27

TSS for Gm20324:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr132402	Chr15:82783219-82783236 (+)	-53 bp
Tssr132403	Chr15:82783240-82783259 (+)	-31 bp
Tssr132404	Chr15:82783261-82783283 (+)	-9 bp