Gm20342 Gene Detail

Summary

• Symbol
  Gm20342
• Name
  predicted gene, 20342

• Feature Type
  lncRNA gene
• IDs
  MGI:5012527
  NCBI Gene: 100504668
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:63156277-63165996 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 32.23 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  326 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5012527	lncRNA gene	Chr1:63156277-63165996 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004852	lincRNA gene	Chr1:63250826-63263677 (+)
A/J	MGP_AJ_G0004833	lincRNA gene	Chr1:61016733-61026415 (+)
AKR/J	MGP_AKRJ_G0004811	lincRNA gene	Chr1:62696771-62706705 (+)
BALB/cJ	MGP_BALBcJ_G0004814	lincRNA gene	Chr1:61093543-61107151 (+)
C3H/HeJ	MGP_C3HHeJ_G0004763	lincRNA gene	Chr1:62975756-62986078 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004965	lincRNA gene	Chr1:65682050-65698058 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004392	lincRNA gene	Chr1:57130418-57140772 (+)
CAST/EiJ	MGP_CASTEiJ_G0004716	lincRNA gene	Chr1:62234807-62247279 (+)
CBA/J	MGP_CBAJ_G0004756	lincRNA gene	Chr1:67774981-67788910 (+)
DBA/2J	MGP_DBA2J_G0004774	lincRNA gene	Chr1:60421881-60431868 (+)
FVB/NJ	MGP_FVBNJ_G0004794	lincRNA gene	Chr1:59723317-59732785 (+)
LP/J	MGP_LPJ_G0004853	lincRNA gene	Chr1:64138928-64151349 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004778	lincRNA gene	Chr1:70680132-70689846 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004969	lincRNA gene	Chr1:62674376-62685275 (+)
PWK/PhJ	MGP_PWKPhJ_G0004669	lincRNA gene	Chr1:59800133-59810102 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004595	lincRNA gene	Chr1:62170804-62182211 (+)
WSB/EiJ	MGP_WSBEiJ_G0004761	lincRNA gene	Chr1:62401777-62412244 (+)

Homology

• Gene Tree
  Gm20342
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm20342
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000101599 (Evidence)
• NCBI Gene
  100504668

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101599	Ensembl Gene Model | MGI Sequence Detail	9720	C57BL/6J
transcript	ENSMUST00000185480	Ensembl | MGI Sequence Detail	9720	Not Applicable

References

• Summaries
  All 7

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45