Gm20386 Pseudogene Detail

Summary

• Symbol
  Gm20386
• Name
  predicted gene 20386

• Feature Type
  pseudogene
• IDs
  MGI:5141851
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:110715311-110715442 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 51.19 cM

Strain
Comparison

• SNPs within 2kb
  137 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5141851	pseudogene	Chr6:110715311-110715442 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013645	pseudogene	Chr6:113114093-113114224 (+)
A/J	MGP_AJ_G0013629	pseudogene	Chr6:108813801-108813932 (+)
AKR/J	MGP_AKRJ_G0013592	pseudogene	Chr6:111737545-111737676 (+)
BALB/cJ	MGP_BALBcJ_G0013609	pseudogene	Chr6:108754555-108754686 (+)
C3H/HeJ	MGP_C3HHeJ_G0013329	pseudogene	Chr6:72571861-72571992 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013995	pseudogene	Chr6:116089048-116089179 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012030	pseudogene	Chr6:116060537-116060668 (-)
CAST/EiJ	MGP_CASTEiJ_G0013171	pseudogene	Chr6:122835530-122835657 (-)
CBA/J	MGP_CBAJ_G0013427	pseudogene	Chr6:120586147-120586278 (+)
DBA/2J	MGP_DBA2J_G0013507	pseudogene	Chr6:107906731-107906862 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0013584	pseudogene	Chr6:113198805-113198936 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013521	pseudogene	Chr6:124974953-124975084 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013986	pseudogene	Chr6:111732695-111732826 (+)
PWK/PhJ	MGP_PWKPhJ_G0012980	pseudogene	Chr6:117090951-117091469 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0012765	pseudogene	Chr6:121148252-121148383 (-)
WSB/EiJ	MGP_WSBEiJ_G0013227	pseudogene	Chr6:122697233-122697360 (-)

Homology

• Gene Tree
  Gm20386
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000092603 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092603	Ensembl Gene Model | MGI Sequence Detail	132	C57BL/6J
transcript	ENSMUST00000174010	Ensembl | MGI Sequence Detail	132	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;