Gm20396 Pseudogene Detail

Summary

• Symbol
  Gm20396
• Name
  predicted gene 20396

• Feature Type
  pseudogene
• IDs
  MGI:5141861
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:117232047-117233410 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 69.34 cM

Strain
Comparison

• SNPs within 2kb
  179 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5141861	pseudogene	Chr9:117232047-117233410 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014261	pseudogene	Chr9:120047269-120049490 (+)
A/J	MGP_AJ_G0014277	pseudogene	Chr9:115595843-115598866 (+)
AKR/J	MGP_AKRJ_G0014202	pseudogene	Chr9:118576237-118577600 (+)
BALB/cJ	MGP_BALBcJ_G0014227	pseudogene	Chr9:115449203-115450585 (+)
C3H/HeJ	MGP_C3HHeJ_G0014058	pseudogene	Chr9:119065670-119067250 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014681	pseudogene	Chr9:123308366-123310836 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012489	pseudogene	Chr9:112831246-112832009 (+)
CAST/EiJ	MGP_CASTEiJ_G0013710	pseudogene	Chr9:118993179-118994136 (+)
CBA/J	MGP_CBAJ_G0014040	pseudogene	Chr9:127904586-127908414 (+)
DBA/2J	MGP_DBA2J_G0014124	pseudogene	Chr9:115059685-115060939 (+)
FVB/NJ	MGP_FVBNJ_G0014123	pseudogene	Chr9:113898818-113899763 (+)
LP/J	MGP_LPJ_G0014215	pseudogene	Chr9:120369578-120374414 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014157	pseudogene	Chr9:129041323-129042686 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014650	pseudogene	Chr9:118950693-118951924 (+)
PWK/PhJ	MGP_PWKPhJ_G0013525	pseudogene	Chr9:115421525-115422338 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013316	pseudogene	Chr9:119050873-119051639 (+)
WSB/EiJ	MGP_WSBEiJ_G0013772	pseudogene	Chr9:118863971-118866069 (+)

Homology

• Gene Tree
  Gm20396
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000092504 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092504	Ensembl Gene Model | MGI Sequence Detail	1364	C57BL/6J
transcript	ENSMUST00000173358	Ensembl | MGI Sequence Detail	745	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;