Gm20399 Pseudogene Detail

Summary

• Symbol
  Gm20399
• Name
  predicted gene 20399

• Feature Type
  pseudogene
• IDs
  MGI:5141864
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:5908018-5908149 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 3.42 cM

Strain
Comparison

• SNPs within 2kb
  96 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5141864	pseudogene	Chr7:5908018-5908149 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013798	pseudogene	Chr7:2934336-2934467 (+)
A/J	MGP_AJ_G0013793	pseudogene	Chr7:2840452-2840583 (+)
AKR/J	MGP_AKRJ_G0013745	pseudogene	Chr7:3027148-3027279 (+)
BALB/cJ	MGP_BALBcJ_G0013776	pseudogene	Chr7:2943545-2943676 (+)
C3H/HeJ	MGP_C3HHeJ_G0013602	pseudogene	Chr7:2933770-2933901 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014169	pseudogene	Chr7:3080795-3080926 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0012236	pseudogene	Chr4:47421886-47422006 (-)
CBA/J	MGP_CBAJ_G0013579	pseudogene	Chr7:3193726-3193857 (+)
DBA/2J	MGP_DBA2J_G0013660	pseudogene	Chr7:2872815-2872946 (+)
FVB/NJ	MGP_FVBNJ_G0013659	pseudogene	Chr7:2846030-2846161 (+)
LP/J	MGP_LPJ_G0013741	pseudogene	Chr7:3036146-3036277 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013674	pseudogene	Chr7:3187930-3188061 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014150	pseudogene	Chr7:2859094-2859225 (+)
PWK/PhJ	MGP_PWKPhJ_G0009984	pseudogene	Chr1:137493489-137493609 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0013344	pseudogene	Chr7:2948815-2948946 (+)

Homology

• Gene Tree
  Gm20399
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000092393 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092393	Ensembl Gene Model | MGI Sequence Detail	132	C57BL/6J
transcript	ENSMUST00000174652	Ensembl | MGI Sequence Detail	132	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;