Gm20404 Gene Detail

Summary

• Symbol
  Gm20404
• Name
  predicted gene 20404

• Feature Type
  lncRNA gene
• IDs
  MGI:5141869
  NCBI Gene: 108169163
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:116084611-116104454 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 53.74 cM

Strain
Comparison

• SNPs within 2kb
  313 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5141869	lncRNA gene	Chr6:116084611-116104454 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004345	antisense lncRNA gene	Chr6:118761569-118782177 (+)
A/J	MGP_AJ_G0004322	antisense lncRNA gene	Chr6:114207954-114228994 (+)
AKR/J	MGP_AKRJ_G0004305	antisense lncRNA gene	Chr6:117255676-117275553 (+)
BALB/cJ	MGP_BALBcJ_G0004308	antisense lncRNA gene	Chr6:114015626-114035836 (+)
C3H/HeJ	MGP_C3HHeJ_G0004196	antisense lncRNA gene	Chr6:67013777-67036292 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004458	antisense lncRNA gene	Chr6:121786509-121808197 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003925	antisense lncRNA gene	Chr6:111218039-111239375 (+)
CAST/EiJ	MGP_CASTEiJ_G0004219	antisense lncRNA gene	Chr6:117646077-117666479 (+)
CBA/J	MGP_CBAJ_G0004251	antisense lncRNA gene	Chr6:126573831-126598261 (+)
DBA/2J	MGP_DBA2J_G0004266	antisense lncRNA gene	Chr6:113124027-113144209 (+)
FVB/NJ	MGP_FVBNJ_G0004283	antisense lncRNA gene	Chr6:112312742-112334766 (+)
LP/J	MGP_LPJ_G0004346	antisense lncRNA gene	Chr6:118764582-118788038 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004274	antisense lncRNA gene	Chr6:130739216-130761681 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004455	antisense lncRNA gene	Chr6:117287179-117309879 (+)
PWK/PhJ	MGP_PWKPhJ_G0004172	antisense lncRNA gene	Chr6:112140809-112160997 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004115	antisense lncRNA gene	Chr6:116038116-116056033 (+)
WSB/EiJ	MGP_WSBEiJ_G0004256	antisense lncRNA gene	Chr6:117560105-117582163 (+)

Homology

• Gene Tree
  Gm20404
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Gene trapped
  2
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm20404
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000092625 (Evidence)
• NCBI Gene
  108169163

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092625	Ensembl Gene Model | MGI Sequence Detail	19844	C57BL/6J
transcript	ENSMUST00000174032	Ensembl | MGI Sequence Detail	621	Not Applicable

References

• Summaries
  All 8

  Phenotypes 5
• Earliest
  J:87486 Akeson EC, Chromosomal inversion discovered in C3H/HeJ mice. JAX Notes. 2003;491:15
• Latest
  J:330636 Iwata S, et al., An efficient i-GONAD method for creating and maintaining lethal mutant mice using an inversion balancer identified from the C3H/HeJJcl strain. G3 (Bethesda). 2021;11(8)