Gm20412 Gene Detail

Summary

• Symbol
  Gm20412
• Name
  predicted gene 20412

• Feature Type
  lncRNA gene
• IDs
  MGI:5141877
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:157959074-157959825 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 78.72 cM

Strain
Comparison

• SNPs within 2kb
  123 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5141877	lncRNA gene	Chr2:157959074-157959825 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015483	unclassified non-coding RNA gene	Chr2:163172763-163173514 (+)
A/J	MGP_AJ_G0015460	unclassified non-coding RNA gene	Chr2:156636267-156637018 (+)
AKR/J	MGP_AKRJ_G0015424	unclassified non-coding RNA gene	Chr2:161256442-161257193 (+)
BALB/cJ	MGP_BALBcJ_G0015423	unclassified non-coding RNA gene	Chr2:156938024-156938775 (+)
C3H/HeJ	MGP_C3HHeJ_G0015246	unclassified non-coding RNA gene	Chr2:161564638-161565389 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015877	unclassified non-coding RNA gene	Chr2:168029722-168030473 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013615	unclassified non-coding RNA gene	Chr2:150079833-150080584 (+)
CAST/EiJ	MGP_CASTEiJ_G0014798	unclassified non-coding RNA gene	Chr2:161923542-161924285 (+)
CBA/J	MGP_CBAJ_G0015227	unclassified non-coding RNA gene	Chr2:174063946-174064697 (+)
DBA/2J	MGP_DBA2J_G0015321	unclassified non-coding RNA gene	Chr2:155809242-155809993 (+)
FVB/NJ	MGP_FVBNJ_G0015328	unclassified non-coding RNA gene	Chr2:154210802-154211553 (+)
LP/J	MGP_LPJ_G0015399	unclassified non-coding RNA gene	Chr2:163257266-163258017 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015352	unclassified non-coding RNA gene	Chr2:177876112-177876863 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015917	unclassified non-coding RNA gene	Chr2:161069739-161070490 (+)
PWK/PhJ	MGP_PWKPhJ_G0014586	unclassified non-coding RNA gene	Chr2:155327564-155328315 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014374	unclassified non-coding RNA gene	Chr2:159996787-159997529 (+)
WSB/EiJ	MGP_WSBEiJ_G0014905	unclassified non-coding RNA gene	Chr2:161971269-161972012 (+)

Homology

• Gene Tree
  Gm20412
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000092283 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092283	Ensembl Gene Model | MGI Sequence Detail	752	C57BL/6J
transcript	ENSMUST00000173249	Ensembl | MGI Sequence Detail	633	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;