Gm20420 Gene Detail

Summary

• Symbol
  Gm20420
• Name
  predicted gene 20420

• Feature Type
  lncRNA gene
• IDs
  MGI:5141885
  NCBI Gene: 115488492
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr15:79198396-79200858 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 37.70 cM

Strain
Comparison

• SNPs within 2kb
  163 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5141885	lncRNA gene	Chr15:79198223-79203414 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015304	unclassified non-coding RNA gene	Chr15:79572639-79574002 (+)
A/J	MGP_AJ_G0015279	unclassified non-coding RNA gene	Chr15:76832096-76833463 (+)
AKR/J	MGP_AKRJ_G0015242	unclassified non-coding RNA gene	Chr15:78972219-78973584 (+)
BALB/cJ	MGP_BALBcJ_G0015242	unclassified non-coding RNA gene	Chr15:76821811-76823178 (+)
C3H/HeJ	MGP_C3HHeJ_G0015066	unclassified non-coding RNA gene	Chr15:78965365-78966732 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015696	unclassified non-coding RNA gene	Chr15:82720726-82722085 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013438	unclassified non-coding RNA gene	Chr15:73313045-73314644 (+)
CAST/EiJ	MGP_CASTEiJ_G0014617	unclassified non-coding RNA gene	Chr15:79668787-79670144 (+)
CBA/J	MGP_CBAJ_G0015045	unclassified non-coding RNA gene	Chr15:85278263-85279630 (+)
DBA/2J	MGP_DBA2J_G0015140	unclassified non-coding RNA gene	Chr15:76309330-76310697 (+)
FVB/NJ	MGP_FVBNJ_G0015147	unclassified non-coding RNA gene	Chr15:75344997-75346356 (+)
LP/J	MGP_LPJ_G0015219	unclassified non-coding RNA gene	Chr15:79764635-79765998 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015172	unclassified non-coding RNA gene	Chr15:90406696-90408059 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015735	unclassified non-coding RNA gene	Chr15:78986223-78987590 (+)
PWK/PhJ	MGP_PWKPhJ_G0014408	unclassified non-coding RNA gene	Chr15:76323585-76324950 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014195	unclassified non-coding RNA gene	Chr15:78799995-78801371 (+)
WSB/EiJ	MGP_WSBEiJ_G0014724	unclassified non-coding RNA gene	Chr15:79373145-79374512 (+)

Homology

• Gene Tree
  Gm20420
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  17 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm20420
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000092494 (Evidence)
• NCBI Gene
  115488492

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092494	Ensembl Gene Model | MGI Sequence Detail	2463	C57BL/6J
transcript	ENSMUST00000173178	Ensembl | MGI Sequence Detail	1742	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 22

  Phenotypes 17
• Earliest
  J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
• Latest
  J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27