Gm20428 Pseudogene Detail

Summary

• Symbol
  Gm20428
• Name
  predicted gene 20428

• Feature Type
  pseudogene
• IDs
  MGI:5141893
  NCBI Gene: 105243910
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:39315364-39315646 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 18.23 cM

Strain
Comparison

• SNPs within 2kb
  164 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5141893	pseudogene	Chr1:39314706-39315758 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0010084	pseudogene	Chr1:38004767-38005049 (-)
A/J	MGP_AJ_G0010072	pseudogene	Chr1:36939574-36939856 (-)
AKR/J	MGP_AKRJ_G0010052	pseudogene	Chr1:37450606-37450888 (-)
BALB/cJ	MGP_BALBcJ_G0010059	pseudogene	Chr1:36593503-36593785 (-)
C3H/HeJ	MGP_C3HHeJ_G0009991	pseudogene	Chr1:37686707-37686989 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0010308	pseudogene	Chr1:39594702-39594984 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009783	pseudogene	Chr12:72328652-72328938 (+)
CAST/EiJ	MGP_CASTEiJ_G0009826	pseudogene	Chr1:37571880-37572162 (-)
CBA/J	MGP_CBAJ_G0009962	pseudogene	Chr1:40727987-40728269 (-)
DBA/2J	MGP_DBA2J_G0009985	pseudogene	Chr1:36231795-36232077 (-)
FVB/NJ	MGP_FVBNJ_G0010012	pseudogene	Chr1:35765550-35765832 (-)
LP/J	MGP_LPJ_G0010077	pseudogene	Chr1:38345779-38346061 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0009970	pseudogene	Chr1:42797825-42798107 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010285	pseudogene	Chr1:37557322-37557604 (-)
PWK/PhJ	MGP_PWKPhJ_G0009735	pseudogene	Chr1:36040714-36040996 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0009549	pseudogene	Chr1:37481701-37481983 (-)
WSB/EiJ	MGP_WSBEiJ_G0009890	pseudogene	Chr1:37502451-37502733 (-)

Homology

• Gene Tree
  Gm20428
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm20428
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000092553 (Evidence)
• NCBI Gene
  105243910

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092553	Ensembl Gene Model | MGI Sequence Detail	283	C57BL/6J
transcript	ENSMUST00000174365	Ensembl | MGI Sequence Detail	283	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;