Gm20429 Gene Detail

Summary

• Symbol
  Gm20429
• Name
  predicted gene 20429

• Feature Type
  lncRNA gene
• IDs
  MGI:5141894
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr17:37557762-37590434 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 19.16 cM

Strain
Comparison

• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5141894	lncRNA gene	Chr17:37557762-37590434 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015352	unclassified non-coding RNA gene	Chr17:37623645-37639019 (+)
A/J	MGP_AJ_G0015326	unclassified non-coding RNA gene	Chr17:36478738-36494817 (+)
AKR/J	MGP_AKRJ_G0015290	unclassified non-coding RNA gene	Chr17:36873190-36895474 (+)
BALB/cJ	MGP_BALBcJ_G0015290	unclassified non-coding RNA gene	Chr17:36691776-36693784 (+)
C3H/HeJ	MGP_C3HHeJ_G0015114	unclassified non-coding RNA gene	Chr17:37430271-37432279 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015744	unclassified non-coding RNA gene	Chr17:39261769-39277051 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013485	unclassified non-coding RNA gene	Chr17:34245430-34247435 (+)
CAST/EiJ	MGP_CASTEiJ_G0014665	unclassified non-coding RNA gene	Chr17:37547914-37549922 (+)
CBA/J	MGP_CBAJ_G0015093	unclassified non-coding RNA gene	Chr17:40806398-40823205 (+)
DBA/2J	MGP_DBA2J_G0015188	unclassified non-coding RNA gene	Chr17:35839525-35853632 (+)
FVB/NJ	MGP_FVBNJ_G0015195	unclassified non-coding RNA gene	Chr17:35451017-35453025 (+)
LP/J	MGP_LPJ_G0015268	unclassified non-coding RNA gene	Chr17:38187898-38202447 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015221	unclassified non-coding RNA gene	Chr17:39575905-39577913 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015783	unclassified non-coding RNA gene	Chr17:37247536-37262300 (+)
PWK/PhJ	MGP_PWKPhJ_G0014455	unclassified non-coding RNA gene	Chr17:34614099-34616226 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014242	unclassified non-coding RNA gene	Chr17:35338125-35340147 (+)
WSB/EiJ	MGP_WSBEiJ_G0014772	unclassified non-coding RNA gene	Chr17:37594538-37596546 (+)

Homology

• Gene Tree
  Gm20429
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34

• Ensembl
  ENSMUSG00000092591 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092591	Ensembl Gene Model | MGI Sequence Detail	32673	C57BL/6J
transcript	ENSMUST00000243502	Ensembl | MGI Sequence Detail	2047	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm20429:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr144571	Chr17:37557822-37557837 (+)	68 bp
Tssr144572	Chr17:37557842-37557845 (+)	82 bp