Gm20468 Gene Detail

Summary

• Symbol
  Gm20468
• Name
  predicted gene 20468

• Feature Type
  lncRNA gene
• IDs
  MGI:5141933
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr17:27069657-27117505 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 13.60 cM

Strain
Comparison

• SNPs within 2kb
  1529 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5141933	lncRNA gene	Chr17:27069657-27117505 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005705	lincRNA gene	Chr17:26065059-26109047 (+)
A/J	MGP_AJ_G0005694	lincRNA gene	Chr17:25265795-25302084 (+)
AKR/J	MGP_AKRJ_G0005673	lincRNA gene	Chr17:25396993-25436919 (+)
BALB/cJ	MGP_BALBcJ_G0005674	lincRNA gene	Chr17:25508414-25547437 (+)
C3H/HeJ	MGP_C3HHeJ_G0005621	lincRNA gene	Chr17:25787751-25830638 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005832	lincRNA gene	Chr17:27119662-27168007 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005185	lincRNA gene	Chr17:22705054-22744452 (+)
CAST/EiJ	MGP_CASTEiJ_G0005563	lincRNA gene	Chr17:25725550-25765368 (+)
CBA/J	MGP_CBAJ_G0005609	lincRNA gene	Chr17:28119405-28161517 (+)
DBA/2J	MGP_DBA2J_G0005627	lincRNA gene	Chr17:24848620-24884408 (+)
FVB/NJ	MGP_FVBNJ_G0005653	lincRNA gene	Chr17:24625088-24662002 (+)
LP/J	MGP_LPJ_G0005708	lincRNA gene	Chr17:26321300-26363521 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005638	lincRNA gene	Chr17:27628683-27667204 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005832	lincRNA gene	Chr17:25771744-25814902 (+)
PWK/PhJ	MGP_PWKPhJ_G0005509	lincRNA gene	Chr17:23646695-23689955 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005428	lincRNA gene	Chr17:23815819-23861716 (+)
WSB/EiJ	MGP_WSBEiJ_G0005615	lincRNA gene	Chr17:25814841-25852631 (+)

Homology

• Gene Tree
  Gm20468
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Radiation induced
  2
• Genomic Mutations
  2 involving Gm20468
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26

• Ensembl
  ENSMUSG00000092539 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092539	Ensembl Gene Model | MGI Sequence Detail	47849	C57BL/6J
transcript	ENSMUST00000244217	Ensembl | MGI Sequence Detail	1882	Not Applicable

References

• Summaries
  All 5

  Phenotypes 3
• Earliest
  J:86784 Bergstrom DE, et al., Overlapping deletions spanning the proximal two-thirds of the mouse t complex. Mamm Genome. 2003 Dec;14(12):817-29
• Latest
  J:194116 Flachs P, et al., Interallelic and intergenic incompatibilities of the Prdm9 (Hst1) gene in mouse hybrid sterility. PLoS Genet. 2012;8(11):e1003044

TSS for Gm20468:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr143271	Chr17:27069640-27069661 (+)	-6 bp
Tssr143272	Chr17:27104130-27104158 (+)	34,487 bp