Gm20471 Gene Detail

Summary

• Symbol
  Gm20471
• Name
  predicted gene 20471

• Feature Type
  lncRNA gene
• IDs
  MGI:5141936
  NCBI Gene: 105243993
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:163107925-163114614 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 70.57 cM

Strain
Comparison

• SNPs within 2kb
  214 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5141936	lncRNA gene	Chr1:163107619-163155701 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002780	antisense lncRNA gene	Chr1:168674014-168680714 (+)
A/J	MGP_AJ_G0002756	antisense lncRNA gene	Chr1:161791049-161797749 (+)
AKR/J	MGP_AKRJ_G0002737	antisense lncRNA gene	Chr1:166709772-166716461 (+)
BALB/cJ	MGP_BALBcJ_G0002743	antisense lncRNA gene	Chr1:162294996-162301696 (+)
C3H/HeJ	MGP_C3HHeJ_G0002701	antisense lncRNA gene	Chr1:166884837-166891537 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002886	antisense lncRNA gene	Chr1:174330770-174337459 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002433	antisense lncRNA gene	Chr1:153807518-153814344 (+)
CAST/EiJ	MGP_CASTEiJ_G0002674	antisense lncRNA gene	Chr1:166542872-166549631 (+)
CBA/J	MGP_CBAJ_G0002697	antisense lncRNA gene	Chr1:180551949-180558649 (+)
DBA/2J	MGP_DBA2J_G0002703	antisense lncRNA gene	Chr1:160704884-160711583 (+)
FVB/NJ	MGP_FVBNJ_G0002723	antisense lncRNA gene	Chr1:159144779-159151468 (+)
LP/J	MGP_LPJ_G0002781	antisense lncRNA gene	Chr1:169757576-169764276 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002713	antisense lncRNA gene	Chr1:188059348-188066037 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002890	antisense lncRNA gene	Chr1:166518367-166525056 (+)
PWK/PhJ	MGP_PWKPhJ_G0002631	antisense lncRNA gene	Chr1:159898750-159905533 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002582	antisense lncRNA gene	Chr1:165420919-165427669 (+)
WSB/EiJ	MGP_WSBEiJ_G0002703	antisense lncRNA gene	Chr1:166689337-166695996 (+)

Homology

• Gene Tree
  Gm20471
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm20471
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000092188 (Evidence)
• NCBI Gene
  105243993

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092188	Ensembl Gene Model | MGI Sequence Detail	6690	C57BL/6J
transcript	ENSMUST00000172793	Ensembl | MGI Sequence Detail	626	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;