Gm20483 Gene Detail

Summary

• Symbol
  Gm20483
• Name
  predicted gene 20483

• Feature Type
  lncRNA gene
• IDs
  MGI:5141948
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr17:35962720-35971259 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 18.70 cM

Strain
Comparison

• SNPs within 2kb
  6 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5141948	lncRNA gene	Chr17:35962720-35971259 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003399	antisense lncRNA gene	Chr17:35835585-35845569 (+)
A/J	MGP_AJ_G0003376	antisense lncRNA gene	Chr17:34730318-34739505 (+)
AKR/J	MGP_AKRJ_G0003360	antisense lncRNA gene	Chr17:35156702-35166956 (+)
BALB/cJ	MGP_BALBcJ_G0003365	antisense lncRNA gene	Chr17:34862562-34875570 (+)
C3H/HeJ	MGP_C3HHeJ_G0003317	antisense lncRNA gene	Chr17:35616914-35625424 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003506	antisense lncRNA gene	Chr17:37301806-37313870 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003022	antisense lncRNA gene	Chr17:32428723-32437431 (+)
CAST/EiJ	MGP_CASTEiJ_G0003280	antisense lncRNA gene	Chr17:35717826-35728230 (+)
CBA/J	MGP_CBAJ_G0003314	antisense lncRNA gene	Chr17:38870679-38879169 (+)
DBA/2J	MGP_DBA2J_G0003320	antisense lncRNA gene	Chr17:34042531-34050842 (+)
FVB/NJ	MGP_FVBNJ_G0003338	antisense lncRNA gene	Chr17:33835473-33843991 (+)
LP/J	MGP_LPJ_G0003393	antisense lncRNA gene	Chr17:36217457-36225956 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003326	antisense lncRNA gene	Chr17:37650013-37658530 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003507	antisense lncRNA gene	Chr17:35471027-35479549 (+)
PWK/PhJ	MGP_PWKPhJ_G0003239	antisense lncRNA gene	Chr17:32895594-32904126 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003184	antisense lncRNA gene	Chr17:33504866-33514797 (+)
WSB/EiJ	MGP_WSBEiJ_G0003315	antisense lncRNA gene	Chr17:35616187-35624702 (+)

Homology

• Gene Tree
  Gm20483
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Gm20483
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000092389 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092389	Ensembl Gene Model | MGI Sequence Detail	8540	C57BL/6J
transcript	ENSMUST00000173162	Ensembl | MGI Sequence Detail	851	Not Applicable

References

• Summaries
  All 3

  Phenotypes 1
• Earliest
  J:190754 Ermakova O, et al., Construction and phenotypic analysis of mice carrying a duplication of the major histocompatibility class I (MHC-I) locus. Mamm Genome. 2012 Aug;23(7-8):443-53