Gm20485 Gene Detail

Summary

• Symbol
  Gm20485
• Name
  predicted gene 20485

• Feature Type
  lncRNA gene
• IDs
  MGI:5141950
  NCBI Gene: 105242535
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:136892491-136898576 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 76.03 cM

Strain
Comparison

• SNPs within 2kb
  342 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5141950	lncRNA gene	Chr5:136892489-136899228 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0037047	sense intronic lncRNA gene	Chr5:141551609-141559962 (-)
A/J	MGP_AJ_G0037035	sense intronic lncRNA gene	Chr5:135429881-135437260 (-)
AKR/J	MGP_AKRJ_G0036983	sense intronic lncRNA gene	Chr5:139809734-139816191 (-)
BALB/cJ	MGP_BALBcJ_G0037026	sense intronic lncRNA gene	Chr5:136789347-136796655 (-)
C3H/HeJ	MGP_C3HHeJ_G0036713	sense intronic lncRNA gene	Chr5:140437073-140444346 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0037539	sense intronic lncRNA gene	Chr5:146814669-146822068 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0035901	sense intronic lncRNA gene	Chr5:139853190-139859584 (-)
CBA/J	MGP_CBAJ_G0036688	sense intronic lncRNA gene	Chr5:152538475-152549262 (-)
DBA/2J	MGP_DBA2J_G0036863	sense intronic lncRNA gene	Chr5:135326413-135334012 (-)
FVB/NJ	MGP_FVBNJ_G0036813	sense intronic lncRNA gene	Chr5:134502557-134509908 (-)
LP/J	MGP_LPJ_G0036910	sense intronic lncRNA gene	Chr5:141987701-141995782 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036820	sense intronic lncRNA gene	Chr5:155470778-155477592 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037656	sense intronic lncRNA gene	Chr5:139637226-139647479 (-)
PWK/PhJ	MGP_PWKPhJ_G0035593	sense intronic lncRNA gene	Chr5:134409968-134416519 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0035402	sense intronic lncRNA gene	Chr5:137226225-137234647 (-)
WSB/EiJ	MGP_WSBEiJ_G0036101	sense intronic lncRNA gene	Chr5:140379173-140386577 (-)

Homology

• Gene Tree
  Gm20485
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000092402 (Evidence)
• NCBI Gene
  105242535

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092402	Ensembl Gene Model | MGI Sequence Detail	6086	C57BL/6J
transcript	ENSMUST00000174452	Ensembl | MGI Sequence Detail	394	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm20485:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr53872	Chr5:136898583-136898590 (-)	-11 bp