Gm20501 Gene Detail

Summary

• Symbol
  Gm20501
• Name
  predicted gene 20501

• Feature Type
  lncRNA gene
• IDs
  MGI:5141966
  NCBI Gene: 102635300
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:141497441-141503276 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 87.42 cM

Strain
Comparison

• SNPs within 2kb
  153 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5141966	lncRNA gene	Chr7:141497441-141503276 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015701	unclassified non-coding RNA gene	Chr7:147142405-147143200 (-)
A/J	MGP_AJ_G0015679	unclassified non-coding RNA gene	Chr7:142924831-142925626 (-)
AKR/J	MGP_AKRJ_G0015642	unclassified non-coding RNA gene	Chr7:146908779-146909574 (-)
BALB/cJ	MGP_BALBcJ_G0015640	unclassified non-coding RNA gene	Chr7:142659760-142660555 (-)
C3H/HeJ	MGP_C3HHeJ_G0015462	unclassified non-coding RNA gene	Chr7:146638357-146639152 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0016095	unclassified non-coding RNA gene	Chr7:152508227-152509022 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013824	unclassified non-coding RNA gene	Chr7:144117970-144118782 (-)
CAST/EiJ	MGP_CASTEiJ_G0015017	unclassified non-coding RNA gene	Chr7:138962102-138962897 (-)
CBA/J	MGP_CBAJ_G0015443	unclassified non-coding RNA gene	Chr7:157672185-157672980 (-)
DBA/2J	MGP_DBA2J_G0015539	unclassified non-coding RNA gene	Chr7:140861176-140861971 (-)
FVB/NJ	MGP_FVBNJ_G0015545	unclassified non-coding RNA gene	Chr7:140781363-140782158 (-)
LP/J	MGP_LPJ_G0015619	unclassified non-coding RNA gene	Chr7:148639742-148640537 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015567	unclassified non-coding RNA gene	Chr7:158302554-158303349 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016137	unclassified non-coding RNA gene	Chr7:145853928-145854723 (-)
PWK/PhJ	MGP_PWKPhJ_G0014799	unclassified non-coding RNA gene	Chr7:134159582-134160357 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014588	unclassified non-coding RNA gene	Chr7:132676671-132677470 (-)
WSB/EiJ	MGP_WSBEiJ_G0015122	unclassified non-coding RNA gene	Chr7:146818556-146819350 (-)

Homology

• Gene Tree
  Gm20501
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm20501
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000092536 (Evidence)
• NCBI Gene
  102635300

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092536	Ensembl Gene Model | MGI Sequence Detail	5836	C57BL/6J
transcript	ENSMUST00000211303	Ensembl | MGI Sequence Detail	2194	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:65007 Cattanach BM, et al., Two imprinted gene mutations: three phenotypes. Hum Mol Genet. 2000 Sep 22;9(15):2263-73
• Latest
  J:187438 Peters J, et al., Identification and characterisation of imprinted genes in the mouse. Brief Funct Genomic Proteomic. 2004 Feb;2(4):320-33

TSS for Gm20501:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr75722	Chr7:141504191-141504202 (-)	-921 bp