Gm20511 Gene Detail

Summary

• Symbol
  Gm20511
• Name
  predicted gene 20511

• Feature Type
  lncRNA gene
• IDs
  MGI:5141976
  NCBI Gene: 118567870
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:103081536-103083722 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 66.74 cM

Strain
Comparison

• SNPs within 2kb
  143 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5141976	lncRNA gene	Chr11:103079074-103083722 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0003071	antisense lncRNA gene	Chr11:106248290-106250474 (-)
A/J	MGP_AJ_G0003048	antisense lncRNA gene	Chr11:101739475-101741671 (-)
AKR/J	MGP_AKRJ_G0003029	antisense lncRNA gene	Chr11:104873174-104875360 (-)
BALB/cJ	MGP_BALBcJ_G0003035	antisense lncRNA gene	Chr11:102206245-102208439 (-)
C3H/HeJ	MGP_C3HHeJ_G0002991	antisense lncRNA gene	Chr11:105101008-105103192 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0003177	antisense lncRNA gene	Chr11:109552223-109554409 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002715	antisense lncRNA gene	Chr11:99147670-99149829 (-)
CAST/EiJ	MGP_CASTEiJ_G0002961	antisense lncRNA gene	Chr11:106116328-106118519 (-)
CBA/J	MGP_CBAJ_G0002988	antisense lncRNA gene	Chr11:114106262-114108458 (-)
DBA/2J	MGP_DBA2J_G0002994	antisense lncRNA gene	Chr11:101245700-101247884 (-)
FVB/NJ	MGP_FVBNJ_G0003013	antisense lncRNA gene	Chr11:100789434-100791618 (-)
LP/J	MGP_LPJ_G0003070	antisense lncRNA gene	Chr11:106758271-106760455 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003001	antisense lncRNA gene	Chr11:113484437-113486627 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003181	antisense lncRNA gene	Chr11:105257746-105259932 (-)
PWK/PhJ	MGP_PWKPhJ_G0002919	antisense lncRNA gene	Chr11:102318323-102320500 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0002863	antisense lncRNA gene	Chr11:105008484-105010666 (-)
WSB/EiJ	MGP_WSBEiJ_G0002991	antisense lncRNA gene	Chr11:105254811-105257003 (-)

Homology

• Gene Tree
  Gm20511
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Gm20511
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000092371 (Evidence)
• NCBI Gene
  118567870

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092371	Ensembl Gene Model | MGI Sequence Detail	2187	C57BL/6J
transcript	ENSMUST00000174079	Ensembl | MGI Sequence Detail	456	Not Applicable

References

• Summaries
  All 9

  Phenotypes 5
• Earliest
  J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for Gm20511:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr111158	Chr11:103084350-103084366 (-)	-636 bp