Gm20530 Pseudogene Detail

Summary

• Symbol
  Gm20530
• Name
  predicted gene 20530

• Feature Type
  pseudogene
• IDs
  MGI:5141995
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr17:36405073-36405655 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 18.91 cM

Strain
Comparison

• SNPs within 2kb
  57 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5141995	pseudogene	Chr17:36405073-36405655 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0040149	pseudogene	Chr17:33912751-36325683 (+)
A/J	MGP_AJ_G0040141	pseudogene	Chr17:32745921-35208829 (+)
AKR/J	MGP_AKRJ_G0040079	pseudogene	Chr17:35616675-35617257 (+)
BALB/cJ	MGP_BALBcJ_G0040144	pseudogene	Chr17:35424061-35425262 (+)
C3H/HeJ	MGP_C3HHeJ_G0039789	pseudogene	Chr17:36095457-36096039 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040734	pseudogene	Chr17:37815543-37816125 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0039754	pseudogene	Chr17:39404736-39405318 (+)
DBA/2J	MGP_DBA2J_G0039952	pseudogene	Chr17:34561719-34562920 (+)
FVB/NJ	MGP_FVBNJ_G0039899	pseudogene	Chr17:31988820-34285484 (+)
LP/J	MGP_LPJ_G0039983	pseudogene	Chr17:34187405-36701610 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039887	pseudogene	Chr17:35647391-38175518 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040832	pseudogene	Chr17:35931696-35932278 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0039106	pseudogene	Chr17:36350384-36351522 (+)

Homology

• Gene Tree
  Gm20530
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Gm20530
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16

• Ensembl
  ENSMUSG00000092304 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092304	Ensembl Gene Model | MGI Sequence Detail	583	C57BL/6J
transcript	ENSMUST00000174261	Ensembl | MGI Sequence Detail	254	Not Applicable

References

• Summaries
  All 3

  Phenotypes 1
• Earliest
  J:190754 Ermakova O, et al., Construction and phenotypic analysis of mice carrying a duplication of the major histocompatibility class I (MHC-I) locus. Mamm Genome. 2012 Aug;23(7-8):443-53