Gm20531 Gene Detail

Summary

• Symbol
  Gm20531
• Name
  predicted gene 20531

• Feature Type
  lncRNA gene
• IDs
  MGI:5141996
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:124709131-124715003 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 59.17 cM

Strain
Comparison

• SNPs within 2kb
  176 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5141996	lncRNA gene	Chr6:124709131-124715003 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004355	antisense lncRNA gene	Chr6:128035497-128042666 (+)
A/J	MGP_AJ_G0004332	antisense lncRNA gene	Chr6:123223232-123229084 (+)
AKR/J	MGP_AKRJ_G0004314	antisense lncRNA gene	Chr6:126581784-126587657 (+)
BALB/cJ	MGP_BALBcJ_G0004318	antisense lncRNA gene	Chr6:122817249-122828940 (+)
C3H/HeJ	MGP_C3HHeJ_G0004267	antisense lncRNA gene	Chr6:126630618-126638669 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004468	antisense lncRNA gene	Chr6:131425391-131431649 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003930	antisense lncRNA gene	Chr6:120409917-120415702 (+)
CAST/EiJ	MGP_CASTEiJ_G0004228	antisense lncRNA gene	Chr6:126833074-126840887 (+)
CBA/J	MGP_CBAJ_G0004261	antisense lncRNA gene	Chr6:136452665-136461093 (+)
DBA/2J	MGP_DBA2J_G0004276	antisense lncRNA gene	Chr6:122148821-122154681 (+)
FVB/NJ	MGP_FVBNJ_G0004293	antisense lncRNA gene	Chr6:121052596-121058653 (+)
LP/J	MGP_LPJ_G0004355	antisense lncRNA gene	Chr6:128209110-128216667 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004284	antisense lncRNA gene	Chr6:140507283-140513131 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004465	antisense lncRNA gene	Chr6:126473446-126479327 (+)
PWK/PhJ	MGP_PWKPhJ_G0004181	antisense lncRNA gene	Chr6:120376841-120382692 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004123	antisense lncRNA gene	Chr6:124549585-124555503 (+)
WSB/EiJ	MGP_WSBEiJ_G0004266	antisense lncRNA gene	Chr6:126832935-126838837 (+)

Homology

• Gene Tree
  Gm20531
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  4
• Gene trapped
  4
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000092482 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092482	Ensembl Gene Model | MGI Sequence Detail	5873	C57BL/6J
transcript	ENSMUST00000174861	Ensembl | MGI Sequence Detail	1373	Not Applicable

References

• Summaries
  All 5

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9