Gm20534 Pseudogene Detail

Summary

• Symbol
  Gm20534
• Name
  predicted gene 20534

• Feature Type
  pseudogene
• IDs
  MGI:5141999
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:90033608-90033779 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 40.02 cM

Strain
Comparison

• SNPs within 2kb
  114 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5141999	pseudogene	Chr6:90033608-90033779 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0040469	pseudogene	Chr6:91533414-91533585 (+)
A/J	MGP_AJ_G0040449	pseudogene	Chr6:88061836-88062007 (+)
AKR/J	MGP_AKRJ_G0040376	pseudogene	Chr6:90533956-90534127 (+)
BALB/cJ	MGP_BALBcJ_G0040456	pseudogene	Chr6:88032527-88032698 (+)
C3H/HeJ	MGP_C3HHeJ_G0040066	pseudogene	Chr6:93910808-93910979 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0041072	pseudogene	Chr6:93974264-93974435 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0039141	pseudogene	Chr6:90661397-90661568 (+)
CBA/J	MGP_CBAJ_G0040047	pseudogene	Chr6:97496006-97496177 (+)
DBA/2J	MGP_DBA2J_G0040248	pseudogene	Chr6:87260164-87260335 (+)
FVB/NJ	MGP_FVBNJ_G0040198	pseudogene	Chr6:86478936-86479107 (+)
LP/J	MGP_LPJ_G0040290	pseudogene	Chr6:91512931-91513102 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0040189	pseudogene	Chr6:101577911-101578082 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0041149	pseudogene	Chr6:90381916-90382087 (+)
PWK/PhJ	MGP_PWKPhJ_G0038821	pseudogene	Chr6:86248331-86248502 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0038529	pseudogene	Chr6:89228745-89228891 (+)
WSB/EiJ	MGP_WSBEiJ_G0039385	pseudogene	Chr6:90817509-90817680 (+)

Homology

• Gene Tree
  Gm20534
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm20534
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000092588 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092588	Ensembl Gene Model | MGI Sequence Detail	172	C57BL/6J
transcript	ENSMUST00000172957	Ensembl | MGI Sequence Detail	172	Not Applicable

References

• Summaries
  All 7

  Phenotypes 5
• Earliest
  J:21726 Champion KM, et al., Identification of a heritable deficiency of the folate-dependent enzyme 10-formyltetrahydrofolate dehydrogenase in mice. Proc Natl Acad Sci U S A. 1994 Nov 22;91(24):11338-42
• Latest
  J:134595 Anthony TE, et al., The folate metabolic enzyme ALDH1L1 is restricted to the midline of the early CNS, suggesting a role in human neural tube defects. J Comp Neurol. 2007 Jan 10;500(2):368-83