Gm20547 Gene Detail

Summary

• Symbol
  Gm20547
• Name
  predicted gene 20547

• Feature Type
  protein coding gene
• IDs
  MGI:5142012
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:35075388-35101018 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 18.41 cM

Strain
Comparison

• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5142012	protein coding gene	Chr17:35075388-35101018 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0023594	protein coding gene	Chr17:34968229-34996966 (-)
A/J	MGP_AJ_G0023556	protein coding gene	Chr17:33826620-33853039 (-)
AKR/J	MGP_AKRJ_G0023522	protein coding gene	Chr17:34285492-34311880 (-)
BALB/cJ	MGP_BALBcJ_G0023561	protein coding gene	Chr17:33956932-33982663 (-)
C3H/HeJ	MGP_C3HHeJ_G0023321	protein coding gene	Chr17:34685730-34711519 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0024001	protein coding gene	Chr17:36305539-36335884 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0021480	protein coding gene	Chr17:31591307-31616809 (-)
CAST/EiJ	MGP_CASTEiJ_G0022819	protein coding gene	Chr17:34680603-34708187 (-)
CBA/J	MGP_CBAJ_G0023299	protein coding gene	Chr17:37817111-37844144 (-)
DBA/2J	MGP_DBA2J_G0023427	protein coding gene	Chr17:33140976-33167541 (-)
FVB/NJ	MGP_FVBNJ_G0023394	protein coding gene	Chr17:32971224-33000256 (-)
LP/J	MGP_LPJ_G0023504	protein coding gene	Chr17:35279085-35308163 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0023417	protein coding gene	Chr17:36745867-36774867 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0024043	protein coding gene	Chr17:34515373-34541900 (-)
PWK/PhJ	MGP_PWKPhJ_G0022568	protein coding gene	Chr17:31970630-31996689 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0022385	protein coding gene	Chr17:32516563-32544684 (-)
WSB/EiJ	MGP_WSBEiJ_G0022881	protein coding gene	Chr17:34624112-34650300 (-)

Homology

• Gene Tree
  Gm20547
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  9 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• UniProt
  2

• Ensembl
  ENSMUSG00000092511 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092511	Ensembl Gene Model | MGI Sequence Detail	25631	C57BL/6J
transcript	ENSMUST00000146299	Ensembl | MGI Sequence Detail	3893	Not Applicable
polypeptide	ENSMUSP00000117677	Ensembl | MGI Sequence Detail	1276	Not Applicable

Protein
Information

• UniProt
  2 Sequences
• EC
  3.4.21.43
• InterPro Domains
  IPR011360 Complement B/C2
  IPR001314 Peptidase S1A, chymotrypsin family
  IPR009003 Peptidase S1, PA clan
  IPR043504 Peptidase S1, PA clan, chymotrypsin-like fold
  IPR001254 Serine proteases, trypsin domain
  IPR018114 Serine proteases, trypsin family, histidine active site
  IPR033116 Serine proteases, trypsin family, serine active site
  IPR000436 Sushi/SCR/CCP domain
  IPR035976 Sushi/SCR/CCP superfamily
  IPR036465 von Willebrand factor A-like domain superfamily
  IPR002035 von Willebrand factor, type A

References

• Summaries
  All 3
• Earliest
  J:53168 Bairoch A, et al., SWISS-PROT Annotated protein sequence database. Database Release. 1999;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm20547:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr147691	Chr17:35100980-35101056 (-)	0 bp