Gm20611 Gene Detail

Summary

• Symbol
  Gm20611
• Name
  predicted gene 20611

• Feature Type
  lncRNA gene
• IDs
  MGI:5313058
  NCBI Gene: 327760
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:60867082-60873859 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 32.13 cM

Strain
Comparison

• SNPs within 2kb
  319 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5313058	lncRNA gene	Chr10:60867082-60873859 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005120	lincRNA gene	Chr10:60317629-60324398 (+)
A/J	MGP_AJ_G0005103	lincRNA gene	Chr10:58541136-58547913 (+)
AKR/J	MGP_AKRJ_G0005081	lincRNA gene	Chr10:60057153-60063930 (+)
BALB/cJ	MGP_BALBcJ_G0005084	lincRNA gene	Chr10:58607946-58614759 (+)
C3H/HeJ	MGP_C3HHeJ_G0005033	lincRNA gene	Chr10:59964606-59971380 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005234	lincRNA gene	Chr10:62456075-62462851 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004640	lincRNA gene	Chr10:55514600-55521370 (+)
CAST/EiJ	MGP_CASTEiJ_G0004980	lincRNA gene	Chr10:59942259-59948968 (+)
CBA/J	MGP_CBAJ_G0005023	lincRNA gene	Chr10:64764829-64771607 (+)
DBA/2J	MGP_DBA2J_G0005042	lincRNA gene	Chr10:57815579-57822356 (+)
FVB/NJ	MGP_FVBNJ_G0005064	lincRNA gene	Chr10:57070556-57077811 (+)
LP/J	MGP_LPJ_G0005121	lincRNA gene	Chr10:60726515-60733287 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005047	lincRNA gene	Chr10:67151319-67158095 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005241	lincRNA gene	Chr10:59861097-59867861 (+)
PWK/PhJ	MGP_PWKPhJ_G0004931	lincRNA gene	Chr10:57640839-57647869 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004856	lincRNA gene	Chr10:59204680-59211357 (+)
WSB/EiJ	MGP_WSBEiJ_G0005027	lincRNA gene	Chr10:59789874-59798130 (+)

Homology

• Gene Tree
  Gm20611
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm20611
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000093568 (Evidence)
• NCBI Gene
  327760

Representative Sequences			Length	Strain/Species
genomic	327760	NCBI Gene Model | MGI Sequence Detail	6778	C57BL/6J
transcript	NR_040638	RefSeq | MGI Sequence Detail	1131	C57BL/6

Molecular
Reagents

• All nucleic 4

  Genomic 1

  cDNA 3

References

• Summaries
  All 13

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm20611:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr93644	Chr10:60867047-60867086 (+)	-15 bp