Gm20616 Gene Detail

Summary

• Symbol
  Gm20616
• Name
  predicted gene 20616

• Feature Type
  lncRNA gene
• IDs
  MGI:5313063
  NCBI Gene: 102638259
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:26598222-26600819 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 21.18 cM

Strain
Comparison

• SNPs within 2kb
  143 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5313063	lncRNA gene	Chr19:26598149-26600819 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015384	unclassified non-coding RNA gene	Chr19:24946737-24949334 (-)
A/J	MGP_AJ_G0015359	unclassified non-coding RNA gene	Chr19:23632571-23635168 (-)
AKR/J	MGP_AKRJ_G0015323	unclassified non-coding RNA gene	Chr19:24515361-24517957 (-)
BALB/cJ	MGP_BALBcJ_G0015323	unclassified non-coding RNA gene	Chr19:23694132-23696729 (-)
C3H/HeJ	MGP_C3HHeJ_G0015147	unclassified non-coding RNA gene	Chr19:24507030-24509627 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015777	unclassified non-coding RNA gene	Chr19:25668628-25671225 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013518	unclassified non-coding RNA gene	Chr19:23702505-23705101 (-)
CAST/EiJ	MGP_CASTEiJ_G0014698	unclassified non-coding RNA gene	Chr19:24245028-24247642 (-)
CBA/J	MGP_CBAJ_G0015126	unclassified non-coding RNA gene	Chr19:26863938-26866535 (-)
DBA/2J	MGP_DBA2J_G0015221	unclassified non-coding RNA gene	Chr19:23621012-23623609 (-)
FVB/NJ	MGP_FVBNJ_G0015228	unclassified non-coding RNA gene	Chr19:23472045-23474642 (-)
LP/J	MGP_LPJ_G0015301	unclassified non-coding RNA gene	Chr19:24925780-24928377 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015254	unclassified non-coding RNA gene	Chr19:26820569-26823166 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015816	unclassified non-coding RNA gene	Chr19:24540970-24543567 (-)
PWK/PhJ	MGP_PWKPhJ_G0014488	unclassified non-coding RNA gene	Chr19:23251890-23254498 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014275	unclassified non-coding RNA gene	Chr19:23776701-23779300 (-)
WSB/EiJ	MGP_WSBEiJ_G0014805	unclassified non-coding RNA gene	Chr19:24554758-24557356 (-)

Homology

• Gene Tree
  Gm20616
  

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000093628 (Evidence)
• NCBI Gene
  102638259

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093628	Ensembl Gene Model | MGI Sequence Detail	2598	C57BL/6J
transcript	ENSMUST00000177262	Ensembl | MGI Sequence Detail	716	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm20616:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr158702	Chr19:26600794-26600831 (-)	6 bp