Gm20620 Pseudogene Detail

Summary

• Symbol
  Gm20620
• Name
  predicted gene 20620

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:5313067
  NCBI Gene: 108167695
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:58603127-58603294 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 31.79 cM

Strain
Comparison

• SNPs within 2kb
  104 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5313067	pseudogene	Chr9:58603017-58606052 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0014146	pseudogene	Chr9:57999961-58000128 (-)
A/J	MGP_AJ_G0014165	pseudogene	Chr9:56120647-56120814 (-)
AKR/J	MGP_AKRJ_G0014089	pseudogene	Chr9:57417878-57418045 (-)
BALB/cJ	MGP_BALBcJ_G0014114	pseudogene	Chr9:55888745-55888912 (-)
C3H/HeJ	MGP_C3HHeJ_G0013944	pseudogene	Chr9:57910598-57910765 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0014558	pseudogene	Chr9:59618209-59618376 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012401	pseudogene	Chr9:55393872-55394039 (-)
CAST/EiJ	MGP_CASTEiJ_G0013604	pseudogene	Chr9:57999077-57999244 (-)
CBA/J	MGP_CBAJ_G0013927	pseudogene	Chr9:61710176-61710343 (-)
DBA/2J	MGP_DBA2J_G0014010	pseudogene	Chr9:55965271-55965438 (-)
FVB/NJ	MGP_FVBNJ_G0014010	pseudogene	Chr9:55210081-55210248 (-)
LP/J	MGP_LPJ_G0014093	pseudogene	Chr9:58282261-58282428 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014039	pseudogene	Chr9:63140780-63140947 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014531	pseudogene	Chr9:57436076-57436243 (-)
PWK/PhJ	MGP_PWKPhJ_G0013421	pseudogene	Chr9:56031771-56031938 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0013206	pseudogene	Chr9:57718960-57719127 (-)
WSB/EiJ	MGP_WSBEiJ_G0013663	pseudogene	Chr9:57387010-57387177 (-)

Homology

• Gene Tree
  Gm20620
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000093473 (Evidence)
• NCBI Gene
  108167695

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093473	Ensembl Gene Model | MGI Sequence Detail	168	C57BL/6J
transcript	ENSMUST00000177528	Ensembl | MGI Sequence Detail	168	Not Applicable
polypeptide	XP_036011332	RefSeq | MGI Sequence Detail	82	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;