Gm20627 Gene Detail

Summary

• Symbol
  Gm20627
• Name
  predicted gene 20627

• Feature Type
  lncRNA gene
• IDs
  MGI:5313074
  NCBI Gene: 102631874
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr3:96161935-96163593 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 41.70 cM

Strain
Comparison

• SNPs within 2kb
  133 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5313074	lncRNA gene	Chr3:96161935-96165066 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015512	unclassified non-coding RNA gene	Chr3:97067510-97069168 (-)
A/J	MGP_AJ_G0015489	unclassified non-coding RNA gene	Chr3:94020134-94021792 (-)
AKR/J	MGP_AKRJ_G0015453	unclassified non-coding RNA gene	Chr3:96227183-96228841 (-)
BALB/cJ	MGP_BALBcJ_G0015451	unclassified non-coding RNA gene	Chr3:93796908-93798566 (-)
C3H/HeJ	MGP_C3HHeJ_G0015274	unclassified non-coding RNA gene	Chr3:96508632-96510290 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015905	unclassified non-coding RNA gene	Chr3:100625534-100627192 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013641	unclassified non-coding RNA gene	Chr3:90340177-90341952 (-)
CAST/EiJ	MGP_CASTEiJ_G0014828	unclassified non-coding RNA gene	Chr3:95821693-95823351 (-)
CBA/J	MGP_CBAJ_G0015255	unclassified non-coding RNA gene	Chr3:104309007-104310665 (-)
DBA/2J	MGP_DBA2J_G0015349	unclassified non-coding RNA gene	Chr3:93320867-93322525 (-)
FVB/NJ	MGP_FVBNJ_G0015356	unclassified non-coding RNA gene	Chr3:91381484-91383142 (-)
LP/J	MGP_LPJ_G0015428	unclassified non-coding RNA gene	Chr3:98374930-98376588 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015380	unclassified non-coding RNA gene	Chr3:110403264-110404922 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015946	unclassified non-coding RNA gene	Chr3:95857941-95859599 (-)
PWK/PhJ	MGP_PWKPhJ_G0014615	unclassified non-coding RNA gene	Chr3:93219992-93221635 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014403	unclassified non-coding RNA gene	Chr3:94157870-94159560 (-)
WSB/EiJ	MGP_WSBEiJ_G0014934	unclassified non-coding RNA gene	Chr3:96253401-96255059 (-)

Homology

• Gene Tree
  Gm20627
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  14
• Chemically induced (other)
  1
• Gene trapped
  12
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm20627
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000093507 (Evidence)
• NCBI Gene
  102631874

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093507	Ensembl Gene Model | MGI Sequence Detail	1659	C57BL/6J
transcript	ENSMUST00000176143	Ensembl | MGI Sequence Detail	849	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 11

  Diseases 1

  Phenotypes 6
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm20627:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr34604	Chr3:96163587-96163623 (-)	-12 bp
Tssr34603	Chr3:96163577-96163584 (-)	12 bp
Tssr34602	Chr3:96163560-96163571 (-)	27 bp